Variant report

Variant	rs16961495
Chromosome Location	chr17:17171085-17171086
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:17167538..17169441-chr17:17169773..17172767,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12939385	1.00[CEU][hapmap]
rs7210263	1.00[CEU][hapmap]
rs7212534	1.00[CEU][hapmap]
rs7224335	1.00[CEU][hapmap]
rs7224474	1.00[CEU][hapmap]
rs8068606	1.00[CEU][hapmap]
rs8077027	1.00[CEU][hapmap]
rs8077113	1.00[CEU][hapmap];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833380	chr17:17088416-17241206	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1065811	chr17:17104760-17225204	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv833382	chr17:17124329-17305683	Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv469777	chr17:17127385-17272698	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv482546	chr17:17127385-17272698	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17148600-17172000	Strong transcription	Rectal Mucosa Donor 29	rectum
2	chr17:17148600-17178800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr17:17148600-17179200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr17:17148600-17179600	Strong transcription	Fetal Muscle Trunk	muscle
5	chr17:17148600-17180000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr17:17148800-17178400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr17:17148800-17178400	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr17:17148800-17179000	Strong transcription	Primary T helper cells fromperipheralblood	blood
9	chr17:17148800-17179600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr17:17148800-17179600	Strong transcription	Fetal Muscle Leg	muscle
11	chr17:17148800-17179800	Strong transcription	Fetal Stomach	stomach
12	chr17:17148800-17180200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr17:17148800-17180400	Strong transcription	Fetal Thymus	thymus
14	chr17:17149000-17174800	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr17:17149000-17174800	Strong transcription	Adipose Nuclei	Adipose
16	chr17:17149000-17174800	Strong transcription	Skeletal Muscle Female	skeletal muscle
17	chr17:17149000-17178400	Strong transcription	Duodenum Smooth Muscle	Duodenum
18	chr17:17149000-17178800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr17:17149000-17179200	Strong transcription	Primary T helper cells PMA-I stimulated	--
20	chr17:17149000-17179400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr17:17149000-17180800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr17:17149000-17181200	Strong transcription	Dnd41	blood
23	chr17:17149200-17171400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr17:17149200-17177400	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr17:17149200-17179000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr17:17149200-17179600	Strong transcription	HUES64 Cell Line	embryonic stem cell
27	chr17:17149200-17179600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr17:17149200-17179800	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr17:17149400-17174400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr17:17149400-17175000	Strong transcription	Thymus	Thymus
31	chr17:17149400-17179600	Strong transcription	Duodenum Mucosa	Duodenum
32	chr17:17149400-17179600	Strong transcription	Placenta	Placenta
33	chr17:17149600-17174800	Strong transcription	Cortex derived primary cultured neurospheres	brain
34	chr17:17149800-17179000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr17:17150000-17180000	Strong transcription	Primary T cells from cord blood	blood
36	chr17:17150200-17179400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr17:17150200-17179800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr17:17153400-17174800	Strong transcription	Fetal Intestine Large	intestine
39	chr17:17153600-17178000	Strong transcription	Skeletal Muscle Male	skeletal muscle
40	chr17:17155000-17179800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr17:17155200-17174800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
42	chr17:17156800-17179600	Strong transcription	Liver	Liver
43	chr17:17157200-17175000	Strong transcription	A549	lung
44	chr17:17157600-17179600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr17:17157800-17177600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr17:17158400-17171400	Strong transcription	Primary neutrophils fromperipheralblood	blood
47	chr17:17159600-17172800	Strong transcription	Colon Smooth Muscle	Colon
48	chr17:17159800-17171800	Strong transcription	Primary hematopoietic stem cells	blood
49	chr17:17159800-17179600	Strong transcription	Primary B cells from peripheral blood	blood
50	chr17:17160400-17181800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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