Variant report

Variant	rs7212534
Chromosome Location	chr17:17105444-17105445
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:17103497..17105821-chr17:17140669..17142216,2	K562	blood:
2	chr17:17099063..17102775-chr17:17103264..17109484,6	K562	blood:
3	chr17:16943176..16945630-chr17:17102978..17105800,2	K562	blood:
4	chr17:17103562..17107466-chr17:17107503..17109938,5	MCF-7	breast:
5	chr17:17104294..17107636-chr17:17108280..17111234,4	MCF-7	breast:
6	chr16:31722921..31725637-chr17:17104707..17107535,2	MCF-7	breast:
7	chr17:17104671..17106490-chr17:17138945..17141485,2	MCF-7	breast:
8	chr17:17098202..17101244-chr17:17105252..17107774,3	MCF-7	breast:
9	chr17:17082040..17084851-chr17:17105255..17106821,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000133030	Chromatin interaction
ENSG00000266498	Chromatin interaction
ENSG00000197302	Chromatin interaction
ENSG00000154803	Chromatin interaction
ENSG00000261731	Chromatin interaction
ENSG00000179598	Chromatin interaction
ENSG00000264187	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12939385	1.00[CEU][hapmap]
rs16961495	1.00[CEU][hapmap]
rs7210263	1.00[CEU][hapmap]
rs7224335	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap]
rs7224474	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap]
rs8068606	1.00[CEU][hapmap];0.90[GIH][hapmap]
rs8077027	1.00[CEU][hapmap]
rs8077113	1.00[CEU][hapmap];0.89[AMR][1000 genomes]
rs8082001	0.81[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833380	chr17:17088416-17241206	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1065811	chr17:17104760-17225204	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17086400-17106600	Weak transcription	Colonic Mucosa	Colon
2	chr17:17090200-17107000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr17:17090200-17107400	Weak transcription	Small Intestine	intestine
4	chr17:17090800-17106600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr17:17090800-17106600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr17:17090800-17107200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr17:17091800-17107600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr17:17092400-17105600	Weak transcription	Brain Germinal Matrix	brain
9	chr17:17093600-17107400	Weak transcription	Dnd41	blood
10	chr17:17093600-17108400	Weak transcription	Thymus	Thymus
11	chr17:17093800-17105600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr17:17093800-17105600	Weak transcription	Esophagus	oesophagus
13	chr17:17093800-17107400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr17:17093800-17107600	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr17:17094000-17107200	Weak transcription	Aorta	Aorta
16	chr17:17095000-17105600	Weak transcription	Right Atrium	heart
17	chr17:17095200-17105800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr17:17095200-17108400	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr17:17095400-17108200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr17:17095600-17106600	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr17:17095600-17107200	Weak transcription	Brain Angular Gyrus	brain
22	chr17:17095600-17107400	Weak transcription	HMEC	breast
23	chr17:17095600-17107600	Weak transcription	Osteobl	bone
24	chr17:17096000-17107400	Weak transcription	Fetal Heart	heart
25	chr17:17096200-17107200	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr17:17096800-17106000	Weak transcription	Primary B cells from peripheral blood	blood
27	chr17:17096800-17107400	Weak transcription	Primary B cells from cord blood	blood
28	chr17:17100800-17107600	Weak transcription	NHDF-Ad	bronchial
29	chr17:17101200-17106400	Weak transcription	Fetal Brain Male	brain
30	chr17:17101200-17107800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr17:17102400-17107400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr17:17103200-17105600	Enhancers	Fetal Lung	lung
33	chr17:17103200-17106400	Strong transcription	Primary T cells from cord blood	blood
34	chr17:17103400-17106600	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr17:17103400-17106800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr17:17103600-17105600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr17:17103600-17108200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr17:17103800-17106000	Enhancers	HSMMtube	muscle
39	chr17:17104000-17106400	Strong transcription	Primary neutrophils fromperipheralblood	blood
40	chr17:17104000-17106800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr17:17104000-17107600	Strong transcription	Fetal Intestine Small	intestine
42	chr17:17104200-17106400	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr17:17104200-17106600	Strong transcription	Primary T helper cells PMA-I stimulated	--
44	chr17:17104200-17106600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr17:17104200-17107400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr17:17104200-17108800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr17:17104200-17110400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr17:17104400-17105600	Enhancers	Duodenum Mucosa	Duodenum
49	chr17:17104400-17105800	Enhancers	HSMM	muscle
50	chr17:17104400-17106400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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