Variant report

Variant	rs16962046
Chromosome Location	chr15:49377983-49377984
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16962040	1.00[AMR][1000 genomes]
rs16962045	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59905446	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61307981	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61578756	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61615150	1.00[AMR][1000 genomes]
rs73406139	1.00[AMR][1000 genomes]
rs73406150	1.00[AMR][1000 genomes]
rs73406154	1.00[AMR][1000 genomes]
rs73406155	1.00[AMR][1000 genomes]
rs73406161	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406169	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406171	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406174	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406176	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406183	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406184	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406186	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49372200-49381000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:49375800-49378800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr15:49376200-49378000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr15:49376200-49395200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr15:49376400-49378000	Weak transcription	Fetal Lung	lung
6	chr15:49376400-49397800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr15:49376600-49391600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr15:49376600-49397600	Weak transcription	NHLF	lung
9	chr15:49376800-49378000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr15:49377200-49378400	Active TSS	Brain Hippocampus Middle	brain
11	chr15:49377400-49378400	Active TSS	Brain Inferior Temporal Lobe	brain
12	chr15:49377600-49378200	Active TSS	Brain Angular Gyrus	brain
13	chr15:49377600-49378200	Active TSS	Brain Cingulate Gyrus	brain
14	chr15:49377600-49378400	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr15:49377600-49378400	Active TSS	Brain Anterior Caudate	brain
16	chr15:49377600-49378600	Enhancers	Brain Germinal Matrix	brain
17	chr15:49377800-49378400	Active TSS	Brain Substantia Nigra	brain
18	chr15:49377800-49378400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr15:49377800-49378400	Enhancers	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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