Variant report

Variant	rs16962180
Chromosome Location	chr15:49534746-49534747
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:49533559..49535647-chr15:49536094..49538086,2	K562	blood:
2	chr15:49527986..49530632-chr15:49532231..49535128,2	K562	blood:
3	chr15:49527930..49530105-chr15:49533812..49536591,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs16962272	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7172818	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039220	chr15:49492509-49644261	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv569340	chr15:49529302-49547735	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv569341	chr15:49529302-49547790	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv569342	chr15:49529302-49549943	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv569343	chr15:49531192-49547790	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv569344	chr15:49534702-49546105	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv569345	chr15:49534702-49546939	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv569346	chr15:49534702-49547790	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv569347	chr15:49534702-49549943	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49463600-49540200	Weak transcription	Colonic Mucosa	Colon
2	chr15:49492000-49539400	Weak transcription	Small Intestine	intestine
3	chr15:49508800-49535800	Weak transcription	A549	lung
4	chr15:49510000-49541800	Weak transcription	NHEK	skin
5	chr15:49510200-49537000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr15:49518000-49535400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr15:49518000-49541000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr15:49518200-49548600	Weak transcription	Aorta	Aorta
9	chr15:49518600-49557600	Weak transcription	Esophagus	oesophagus
10	chr15:49518800-49539200	Weak transcription	Ovary	ovary
11	chr15:49520400-49595600	Weak transcription	Right Ventricle	heart
12	chr15:49522000-49537800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr15:49522000-49538200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr15:49522000-49540400	Weak transcription	Stomach Mucosa	stomach
15	chr15:49522200-49535000	Weak transcription	Left Ventricle	heart
16	chr15:49522400-49559400	Weak transcription	Pancreas	Pancrea
17	chr15:49522600-49535200	Weak transcription	Gastric	stomach
18	chr15:49523800-49534800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr15:49523800-49540200	Weak transcription	Spleen	Spleen
20	chr15:49524600-49535200	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr15:49524600-49535200	Weak transcription	Placenta	Placenta
22	chr15:49524600-49535200	Weak transcription	Thymus	Thymus
23	chr15:49524600-49539200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr15:49524600-49544800	Weak transcription	Lung	lung
25	chr15:49525200-49535000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr15:49525200-49535000	Weak transcription	Fetal Intestine Large	intestine
27	chr15:49525400-49535200	Weak transcription	Fetal Intestine Small	intestine
28	chr15:49528000-49535400	Weak transcription	GM12878-XiMat	blood
29	chr15:49528000-49537200	Weak transcription	Brain Substantia Nigra	brain
30	chr15:49528000-49539600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr15:49528000-49576000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr15:49528400-49547800	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr15:49528600-49535000	Weak transcription	Fetal Muscle Leg	muscle
34	chr15:49529000-49537000	Weak transcription	Brain Germinal Matrix	brain
35	chr15:49529200-49550600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr15:49529400-49535200	Weak transcription	Brain Cingulate Gyrus	brain
37	chr15:49529400-49539800	Weak transcription	Brain Hippocampus Middle	brain
38	chr15:49529400-49540200	Weak transcription	Fetal Brain Female	brain
39	chr15:49529400-49544200	Weak transcription	Brain Anterior Caudate	brain
40	chr15:49529400-49545600	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr15:49529600-49541600	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr15:49530000-49539200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr15:49530600-49536600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr15:49530600-49537800	Strong transcription	Liver	Liver
45	chr15:49530800-49536400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr15:49530800-49538600	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr15:49531000-49534800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr15:49531000-49534800	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr15:49531000-49535600	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr15:49531000-49540400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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