Variant report

Variant	rs16962206
Chromosome Location	chr18:29171365-29171366
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs16962144	1.00[AFR][1000 genomes]
rs57355036	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066692	chr18:28856066-29190505	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv543674	chr18:28856066-29190505	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv833615	chr18:29008396-29192976	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv576636	chr18:29146822-29190174	Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1066881	chr18:29149752-29180840	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29167200-29175000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr18:29168800-29172600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr18:29170400-29171800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr18:29170600-29171400	Enhancers	NHEK	skin
5	chr18:29170600-29172000	Enhancers	Pancreas	Pancrea
6	chr18:29170800-29171400	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr18:29170800-29171600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr18:29170800-29171800	Enhancers	Fetal Intestine Large	intestine
9	chr18:29170800-29171800	Enhancers	Fetal Intestine Small	intestine
10	chr18:29170800-29171800	Enhancers	Stomach Mucosa	stomach
11	chr18:29171000-29171400	Flanking Active TSS	Liver	Liver
12	chr18:29171000-29171800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr18:29171000-29171800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr18:29171200-29171600	Flanking Active TSS	HepG2	liver
15	chr18:29171200-29171800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr18:29171200-29171800	Enhancers	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links