Variant report

Variant	rs16963616
Chromosome Location	chr18:30211055-30211056
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16963576	1.00[EUR][1000 genomes]
rs16963609	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56815671	1.00[EUR][1000 genomes]
rs59047993	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59288996	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59903048	0.82[AFR][1000 genomes]
rs59997284	0.82[AFR][1000 genomes]
rs7236226	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73409218	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73409221	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73409228	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73409258	0.83[AFR][1000 genomes]
rs73409260	0.83[AFR][1000 genomes]
rs73409269	0.83[AFR][1000 genomes]
rs73425647	1.00[EUR][1000 genomes]
rs73425650	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9807156	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909525	chr18:30115418-30215056	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv909526	chr18:30124311-30259109	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30209600-30211400	Enhancers	HSMM	muscle
2	chr18:30210200-30211200	Enhancers	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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