Variant report

Variant	rs16963609
Chromosome Location	chr18:30197923-30197924
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16963576	1.00[EUR][1000 genomes]
rs16963616	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs330296	0.81[YRI][hapmap]
rs56815671	1.00[EUR][1000 genomes]
rs59047993	1.00[EUR][1000 genomes]
rs59288996	1.00[EUR][1000 genomes]
rs7236226	1.00[EUR][1000 genomes]
rs73409218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73409221	1.00[EUR][1000 genomes]
rs73409228	1.00[EUR][1000 genomes]
rs73425647	1.00[EUR][1000 genomes]
rs73425650	1.00[EUR][1000 genomes]
rs9807156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909525	chr18:30115418-30215056	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv909526	chr18:30124311-30259109	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2760497	chr18:30195190-30206210	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv527853	chr18:30196804-30206210	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv2761998	chr18:30196804-30209318	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30197200-30198400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr18:30197800-30198800	Enhancers	Fetal Kidney	kidney
3	chr18:30197800-30199000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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