Variant report

Variant	rs330296
Chromosome Location	chr18:30148051-30148052
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:30049677..30051378-chr18:30146420..30148421,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000141441	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs13381681	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs1497243	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1523580	0.91[JPT][hapmap]
rs1523581	1.00[JPT][hapmap]
rs1523582	0.91[JPT][hapmap]
rs162418	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs162419	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs162420	0.91[CEU][hapmap];0.92[CHB][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes]
rs162421	0.95[CEU][hapmap];0.93[CHB][hapmap];0.84[JPT][hapmap];0.99[EUR][1000 genomes]
rs162422	0.95[CEU][hapmap];0.99[EUR][1000 genomes]
rs1648668	0.85[EUR][1000 genomes]
rs1693310	0.88[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs1693311	0.90[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs1693312	0.90[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs1693319	0.91[EUR][1000 genomes]
rs1705439	0.87[EUR][1000 genomes]
rs1705440	0.90[EUR][1000 genomes]
rs1705441	0.91[EUR][1000 genomes]
rs1705442	0.81[EUR][1000 genomes]
rs1705443	0.91[EUR][1000 genomes]
rs1705444	0.91[EUR][1000 genomes]
rs1705445	0.87[EUR][1000 genomes]
rs1705470	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1705477	0.88[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs1807376	0.84[ASN][1000 genomes]
rs189796	0.91[EUR][1000 genomes]
rs1980034	0.91[JPT][hapmap]
rs2088375	0.99[EUR][1000 genomes]
rs330265	0.83[AMR][1000 genomes]
rs330281	0.81[EUR][1000 genomes]
rs330283	0.87[EUR][1000 genomes]
rs330297	0.91[CEU][hapmap];0.87[CHB][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes]
rs330298	0.91[CEU][hapmap];0.93[CHB][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes]
rs330299	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs330300	0.85[EUR][1000 genomes]
rs330301	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs330302	0.99[EUR][1000 genomes]
rs330303	0.95[CEU][hapmap];0.92[CHB][hapmap];0.84[JPT][hapmap];0.99[EUR][1000 genomes]
rs330304	0.95[CEU][hapmap];0.92[CHB][hapmap];0.84[JPT][hapmap];0.99[EUR][1000 genomes]
rs330305	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs330306	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs330307	0.99[EUR][1000 genomes]
rs330308	0.99[EUR][1000 genomes]
rs330309	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs330327	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs330328	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs330330	0.91[JPT][hapmap]
rs4344834	0.92[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs72943518	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8092564	0.91[JPT][hapmap]
rs937400	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs937401	0.98[EUR][1000 genomes]
rs937402	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909524	chr18:30115418-30196804	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv909525	chr18:30115418-30215056	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv909526	chr18:30124311-30259109	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1066906	chr18:30125366-30192567	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv543676	chr18:30125366-30192567	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv431976	chr18:30129553-30194102	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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