Variant report

Variant	rs1523582
Chromosome Location	chr18:30256832-30256833
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:30256817..30259595-chr18:30261052..30262619,2	MCF-7	breast:
2	chr18:30256035..30258710-chr18:30264342..30266968,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11081778	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1125317	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11875943	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12607749	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12957148	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12961515	0.81[ASN][1000 genomes]
rs13381681	0.96[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1511036	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1523580	1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs1523581	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1523585	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1523586	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1523587	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs162418	0.94[JPT][hapmap]
rs162419	0.94[JPT][hapmap]
rs162420	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs162421	0.89[JPT][hapmap]
rs1980034	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1980035	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1980036	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2421639	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2901486	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs330296	0.91[JPT][hapmap]
rs330297	0.89[JPT][hapmap]
rs330298	0.89[JPT][hapmap]
rs330299	0.94[JPT][hapmap]
rs330301	0.94[JPT][hapmap]
rs330303	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs330304	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs330305	0.87[JPT][hapmap]
rs330330	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs330333	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4344834	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs7241043	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8092564	0.94[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909526	chr18:30124311-30259109	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30251800-30262000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr18:30252200-30277200	Weak transcription	Spleen	Spleen
3	chr18:30252800-30262000	Strong transcription	Primary B cells from peripheral blood	blood
4	chr18:30253200-30267200	Strong transcription	HepG2	liver
5	chr18:30253200-30275400	Strong transcription	Primary B cells from cord blood	blood
6	chr18:30254600-30260000	Weak transcription	Fetal Kidney	kidney

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