Variant report

Variant	rs1125317
Chromosome Location	chr18:30251411-30251412
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11081778	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11875943	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12607749	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12957148	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12961515	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13381681	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1511036	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1523580	0.87[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1523581	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1523582	0.95[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1523584	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1523585	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1523586	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1523587	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1523589	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs162418	0.94[JPT][hapmap]
rs162419	0.94[JPT][hapmap]
rs162420	0.85[CHB][hapmap];0.93[JPT][hapmap]
rs162421	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs1846013	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1980034	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.92[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1980035	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1980036	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2421639	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2901486	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs330296	0.91[JPT][hapmap]
rs330297	0.94[JPT][hapmap]
rs330298	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs330299	0.94[JPT][hapmap]
rs330301	0.94[JPT][hapmap]
rs330303	0.81[CHB][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap]
rs330304	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs330305	0.81[GIH][hapmap];0.87[JPT][hapmap]
rs330330	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs330333	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35555190	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4344834	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs59707505	0.85[EUR][1000 genomes]
rs7241043	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8092564	0.94[CHB][hapmap];0.83[CHD][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909526	chr18:30124311-30259109	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30249400-30252000	Weak transcription	Fetal Brain Male	brain
2	chr18:30250000-30253200	Weak transcription	Primary B cells from cord blood	blood
3	chr18:30250200-30251800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr18:30250600-30252800	Weak transcription	Primary B cells from peripheral blood	blood
5	chr18:30251400-30253200	Weak transcription	HepG2	liver

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