Variant report

Variant	rs162418
Chromosome Location	chr18:30158256-30158257
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr18:30157198-30158390	HEK293	kidney:	n/a	n/a

Variant related genes	Relation type
ENSG00000263688	TF binding region

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs13381681	0.88[JPT][hapmap]
rs1497243	0.91[ASN][1000 genomes]
rs1523580	0.87[JPT][hapmap]
rs1523581	1.00[JPT][hapmap]
rs1523582	0.94[JPT][hapmap]
rs162419	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs162420	1.00[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap];0.83[YRI][hapmap];1.00[EUR][1000 genomes]
rs162421	0.95[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes]
rs162422	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs1648668	1.00[EUR][1000 genomes]
rs1693310	0.85[EUR][1000 genomes]
rs1693311	0.85[EUR][1000 genomes]
rs1693312	0.85[EUR][1000 genomes]
rs1705439	0.82[EUR][1000 genomes]
rs1705442	0.81[ASN][1000 genomes]
rs1705445	0.82[EUR][1000 genomes]
rs1705470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1705477	0.85[EUR][1000 genomes]
rs1807376	0.84[ASN][1000 genomes]
rs1980034	0.94[JPT][hapmap]
rs2088375	0.85[EUR][1000 genomes]
rs2421524	0.92[EUR][1000 genomes]
rs2666805	0.93[EUR][1000 genomes]
rs330280	0.92[EUR][1000 genomes]
rs330281	0.81[ASN][1000 genomes]
rs330283	0.82[EUR][1000 genomes]
rs330284	0.91[EUR][1000 genomes]
rs330296	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs330297	1.00[CEU][hapmap];0.87[CHB][hapmap];0.88[JPT][hapmap];0.83[YRI][hapmap];1.00[EUR][1000 genomes]
rs330298	1.00[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];0.83[YRI][hapmap];1.00[EUR][1000 genomes]
rs330299	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs330300	1.00[EUR][1000 genomes]
rs330301	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs330302	0.85[EUR][1000 genomes]
rs330303	0.96[CEU][hapmap];0.93[CHB][hapmap];0.89[CHD][hapmap];0.88[JPT][hapmap];0.80[TSI][hapmap];0.85[EUR][1000 genomes]
rs330304	0.96[CEU][hapmap];0.93[CHB][hapmap];0.84[CHD][hapmap];0.88[JPT][hapmap];0.85[EUR][1000 genomes]
rs330305	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.80[TSI][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs330306	0.93[ASN][1000 genomes]
rs330307	0.85[EUR][1000 genomes]
rs330308	0.85[EUR][1000 genomes]
rs330309	0.91[ASN][1000 genomes]
rs330327	0.83[ASN][1000 genomes]
rs330328	0.83[ASN][1000 genomes]
rs330330	0.94[JPT][hapmap]
rs4344834	0.93[CHB][hapmap];0.87[CHD][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs7239008	0.82[YRI][hapmap]
rs72943518	0.86[ASN][1000 genomes]
rs8092564	0.87[JPT][hapmap]
rs8097669	0.92[EUR][1000 genomes]
rs937400	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs937401	0.85[EUR][1000 genomes]
rs937402	0.85[EUR][1000 genomes]
rs9635884	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909524	chr18:30115418-30196804	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv909525	chr18:30115418-30215056	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv909526	chr18:30124311-30259109	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1066906	chr18:30125366-30192567	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv543676	chr18:30125366-30192567	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv431976	chr18:30129553-30194102	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30157200-30165400	Weak transcription	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links