Variant report

Variant	rs330309
Chromosome Location	chr18:30162892-30162893
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs13381681	0.82[JPT][hapmap]
rs1497243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1523580	0.94[JPT][hapmap]
rs1523581	0.93[JPT][hapmap]
rs1523582	0.88[JPT][hapmap]
rs162418	1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs162419	1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs162420	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs162421	0.91[CHB][hapmap];0.90[EUR][1000 genomes]
rs162422	0.90[EUR][1000 genomes]
rs1693310	0.89[EUR][1000 genomes]
rs1693311	0.89[EUR][1000 genomes]
rs1693312	0.89[EUR][1000 genomes]
rs1693319	0.82[EUR][1000 genomes]
rs1705440	0.81[EUR][1000 genomes]
rs1705441	0.82[EUR][1000 genomes]
rs1705442	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1705443	0.82[EUR][1000 genomes]
rs1705444	0.82[EUR][1000 genomes]
rs1705470	0.91[ASN][1000 genomes]
rs1705477	0.89[EUR][1000 genomes]
rs189796	0.82[EUR][1000 genomes]
rs1980034	0.87[JPT][hapmap]
rs2088375	0.90[EUR][1000 genomes]
rs330265	0.82[AMR][1000 genomes]
rs330281	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs330296	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs330297	0.84[CHB][hapmap]
rs330298	0.91[CHB][hapmap]
rs330299	1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs330301	1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs330302	0.90[EUR][1000 genomes]
rs330303	0.90[CHB][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes]
rs330304	0.90[CHB][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes]
rs330305	1.00[CHB][hapmap];0.87[JPT][hapmap];0.90[EUR][1000 genomes]
rs330306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs330307	0.90[EUR][1000 genomes]
rs330308	0.90[EUR][1000 genomes]
rs330327	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs330328	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs330330	0.88[JPT][hapmap]
rs4344834	0.90[CHB][hapmap];0.87[JPT][hapmap]
rs72943518	0.81[ASN][1000 genomes]
rs8092564	0.93[JPT][hapmap]
rs937400	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs937401	0.89[EUR][1000 genomes]
rs937402	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909524	chr18:30115418-30196804	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv909525	chr18:30115418-30215056	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv909526	chr18:30124311-30259109	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1066906	chr18:30125366-30192567	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv543676	chr18:30125366-30192567	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv431976	chr18:30129553-30194102	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30157200-30165400	Weak transcription	Brain Angular Gyrus	brain
2	chr18:30162400-30163000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr18:30162400-30163200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr18:30162400-30163200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr18:30162600-30163200	Enhancers	H1 Cell Line	embryonic stem cell
6	chr18:30162800-30163000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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