Variant report

Variant	rs330265
Chromosome Location	chr18:30205463-30205464
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs13381681	0.88[CHB][hapmap];0.88[JPT][hapmap]
rs1497243	0.82[AMR][1000 genomes]
rs1523580	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs1523581	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs1523582	0.83[CHB][hapmap];0.94[JPT][hapmap]
rs162418	0.88[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs162419	0.88[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs162420	0.89[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap]
rs162421	0.92[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap]
rs162422	0.92[CEU][hapmap]
rs1693319	0.81[EUR][1000 genomes]
rs1705440	0.81[EUR][1000 genomes]
rs1705441	0.81[EUR][1000 genomes]
rs1705442	0.92[AMR][1000 genomes]
rs1705443	0.81[EUR][1000 genomes]
rs1705444	0.81[EUR][1000 genomes]
rs189796	0.81[EUR][1000 genomes]
rs1980034	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs330281	0.90[AMR][1000 genomes]
rs330296	0.91[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes]
rs330297	0.89[CEU][hapmap];0.83[JPT][hapmap]
rs330298	0.89[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap]
rs330299	0.88[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs330301	0.92[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes]
rs330303	0.92[CEU][hapmap];0.80[CHB][hapmap];0.88[JPT][hapmap]
rs330304	0.92[CEU][hapmap];0.80[CHB][hapmap];0.88[JPT][hapmap]
rs330305	0.92[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap]
rs330306	0.82[AMR][1000 genomes]
rs330309	0.82[AMR][1000 genomes]
rs330327	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs330328	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs330330	0.94[JPT][hapmap]
rs4344834	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs8092564	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs937400	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909525	chr18:30115418-30215056	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv909526	chr18:30124311-30259109	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2760497	chr18:30195190-30206210	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv527853	chr18:30196804-30206210	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv2761998	chr18:30196804-30209318	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30205200-30205600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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