Variant report

Variant	rs72943518
Chromosome Location	chr18:30133875-30133876
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1497243	0.81[ASN][1000 genomes]
rs162418	0.86[ASN][1000 genomes]
rs162419	0.86[ASN][1000 genomes]
rs162421	0.81[EUR][1000 genomes]
rs162422	0.81[EUR][1000 genomes]
rs1705465	0.85[ASN][1000 genomes]
rs1705470	0.86[ASN][1000 genomes]
rs1807376	0.98[ASN][1000 genomes]
rs2088375	0.81[EUR][1000 genomes]
rs330296	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs330299	0.85[ASN][1000 genomes]
rs330301	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs330302	0.81[EUR][1000 genomes]
rs330303	0.81[EUR][1000 genomes]
rs330304	0.81[EUR][1000 genomes]
rs330305	0.81[EUR][1000 genomes]
rs330306	0.83[ASN][1000 genomes]
rs330307	0.81[EUR][1000 genomes]
rs330308	0.81[EUR][1000 genomes]
rs330309	0.81[ASN][1000 genomes]
rs735784	0.84[ASN][1000 genomes]
rs937400	0.85[ASN][1000 genomes]
rs937401	0.80[EUR][1000 genomes]
rs937402	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909524	chr18:30115418-30196804	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv909525	chr18:30115418-30215056	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv909526	chr18:30124311-30259109	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1066906	chr18:30125366-30192567	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv543676	chr18:30125366-30192567	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv431976	chr18:30129553-30194102	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30131200-30136400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr18:30131600-30136800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr18:30133200-30134600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr18:30133400-30136400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr18:30133800-30134000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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