Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:30133804..30136376-chr18:30138480..30140813,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs13381681	0.82[JPT][hapmap]
rs1523580	0.81[JPT][hapmap]
rs1523581	0.93[JPT][hapmap]
rs1523582	0.88[JPT][hapmap]
rs162418	0.93[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs162419	0.93[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs162420	0.87[CHB][hapmap]
rs162421	0.87[CHB][hapmap]
rs1705465	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1705470	0.84[ASN][1000 genomes]
rs1980034	0.87[JPT][hapmap]
rs330296	0.93[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs330297	0.82[CHB][hapmap]
rs330298	0.88[CHB][hapmap]
rs330299	0.93[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs330301	0.94[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs330303	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs330304	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs330305	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs330306	0.81[ASN][1000 genomes]
rs330330	0.88[JPT][hapmap]
rs4344834	0.87[CHB][hapmap];0.87[JPT][hapmap];0.82[EUR][1000 genomes]
rs72943518	0.98[ASN][1000 genomes]
rs735784	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8092564	0.80[JPT][hapmap]
rs937400	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909524	chr18:30115418-30196804	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv909525	chr18:30115418-30215056	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv909526	chr18:30124311-30259109	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1066906	chr18:30125366-30192567	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv543676	chr18:30125366-30192567	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv431976	chr18:30129553-30194102	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30131200-30136400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr18:30131600-30136800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr18:30133400-30136400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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