Variant report

Variant	rs16964030
Chromosome Location	chr18:30462647-30462648
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10502611	1.00[AMR][1000 genomes]
rs10502612	1.00[AMR][1000 genomes]
rs10502613	1.00[AMR][1000 genomes]
rs12104009	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16959892	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16963996	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16964056	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28516912	1.00[AMR][1000 genomes]
rs28521293	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28553954	1.00[AMR][1000 genomes]
rs28687635	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55668667	1.00[AMR][1000 genomes]
rs73413332	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413358	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413363	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73413368	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8089110	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8090546	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8096286	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9948188	1.00[AMR][1000 genomes]
rs9960717	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758474	chr18:30383327-30574737	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2758720	chr18:30383327-30574737	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv32785	chr18:30413359-30471471	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30458000-30462800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr18:30458200-30466200	Enhancers	Primary B cells from peripheral blood	blood
3	chr18:30458200-30466400	Enhancers	Primary B cells from cord blood	blood
4	chr18:30459000-30462800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr18:30460400-30468800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr18:30460800-30470200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr18:30461200-30465600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr18:30461600-30465800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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