Variant report

Variant	rs55668667
Chromosome Location	chr18:30469677-30469678
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10502611	1.00[AMR][1000 genomes]
rs10502612	1.00[AMR][1000 genomes]
rs10502613	1.00[AMR][1000 genomes]
rs12104009	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16959892	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16963996	1.00[AMR][1000 genomes]
rs16964030	1.00[AMR][1000 genomes]
rs16964056	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28516912	1.00[AMR][1000 genomes]
rs28521293	1.00[AMR][1000 genomes]
rs28553954	1.00[AMR][1000 genomes]
rs28687635	1.00[AMR][1000 genomes]
rs73413332	1.00[AMR][1000 genomes]
rs73413358	1.00[AMR][1000 genomes]
rs73413363	1.00[AMR][1000 genomes]
rs73413368	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8089110	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8090546	1.00[AMR][1000 genomes]
rs8096286	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9948188	1.00[AMR][1000 genomes]
rs9960717	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758474	chr18:30383327-30574737	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2758720	chr18:30383327-30574737	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv32785	chr18:30413359-30471471	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30460800-30470200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr18:30466200-30471200	Weak transcription	Primary B cells from peripheral blood	blood
3	chr18:30467400-30471400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr18:30467600-30470600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr18:30468200-30471200	Weak transcription	Primary B cells from cord blood	blood
6	chr18:30468400-30470000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr18:30468400-30471600	Weak transcription	Fetal Intestine Large	intestine
8	chr18:30468600-30470200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr18:30468600-30471200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr18:30468800-30470000	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr18:30468800-30471400	Enhancers	Dnd41	blood
12	chr18:30469200-30470600	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr18:30469200-30470800	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr18:30469200-30470800	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr18:30469400-30469800	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr18:30469400-30470000	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr18:30469400-30470000	Enhancers	HepG2	liver
18	chr18:30469400-30470200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr18:30469400-30470200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr18:30469400-30470400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr18:30469600-30470800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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