Variant report

Variant	rs16964121
Chromosome Location	chr18:30517962-30517963
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11872801	1.00[EUR][1000 genomes]
rs1403758	1.00[EUR][1000 genomes]
rs1539816	1.00[EUR][1000 genomes]
rs7235178	1.00[EUR][1000 genomes]
rs73955287	1.00[EUR][1000 genomes]
rs8098125	0.82[YRI][hapmap]
rs9966457	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758474	chr18:30383327-30574737	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2758720	chr18:30383327-30574737	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1060448	chr18:30481131-30540347	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1056985	chr18:30486272-30540347	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv1816769	chr18:30486596-30518855	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv528397	chr18:30498621-30556985	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30516000-30518000	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr18:30516400-30518000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr18:30517200-30518000	Enhancers	H1 Cell Line	embryonic stem cell
4	chr18:30517200-30518000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr18:30517400-30518000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr18:30517600-30518000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr18:30517800-30518000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr18:30517800-30518000	Flanking Active TSS	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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