Variant report

Variant	rs16964417
Chromosome Location	chr15:44794492-44794493
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:44718212..44720836-chr15:44792957..44795594,3	MCF-7	breast:
2	chr15:44793236..44795196-chr15:44828763..44831318,2	K562	blood:
3	chr15:44781921..44783555-chr15:44793995..44795754,2	K562	blood:
4	chr15:44358581..44359093-chr15:44794134..44794738,2	K562	blood:
5	chr15:44792872..44795077-chr15:44796224..44800034,3	K562	blood:

Variant related genes	Relation type
ENSG00000259595	Chromatin interaction
ENSG00000179523	Chromatin interaction
ENSG00000104131	Chromatin interaction
ENSG00000137770	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1863755	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2251889	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2555346	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28645643	1.00[EUR][1000 genomes]
rs28656431	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4611428	0.90[AFR][1000 genomes]
rs6493107	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73417545	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431387	chr15:43929378-44862930	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
2	nsv931051	chr15:43988761-44833518	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
3	esv3410956	chr15:44425145-44823647	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv904177	chr15:44582886-44821843	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv904179	chr15:44614684-44821843	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	esv3386433	chr15:44654644-45037538	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	135 gene(s)	inside rSNPs	diseases
7	nsv904180	chr15:44783700-44820054	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44721000-44828000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:44740600-44795600	Weak transcription	Esophagus	oesophagus
3	chr15:44740600-44824600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:44750000-44827400	Weak transcription	Pancreas	Pancrea
5	chr15:44750200-44828000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr15:44751000-44795400	Weak transcription	Stomach Mucosa	stomach
7	chr15:44754600-44816200	Weak transcription	Brain Angular Gyrus	brain
8	chr15:44757000-44827400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr15:44774000-44800400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr15:44775800-44820200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:44776200-44801400	Strong transcription	Dnd41	blood
12	chr15:44777200-44803800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
13	chr15:44777600-44801800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr15:44778000-44827800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr15:44778000-44827800	Weak transcription	Psoas Muscle	Psoas
16	chr15:44779800-44795600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr15:44779800-44813600	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr15:44779800-44824200	Weak transcription	Gastric	stomach
19	chr15:44779800-44827800	Weak transcription	Aorta	Aorta
20	chr15:44780600-44795400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr15:44782000-44795600	Weak transcription	Brain Substantia Nigra	brain
22	chr15:44782000-44796600	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr15:44782600-44794800	Weak transcription	A549	lung
24	chr15:44782800-44795600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr15:44783000-44795000	Weak transcription	NH-A	brain
26	chr15:44783000-44795600	Weak transcription	NHEK	skin
27	chr15:44783200-44819400	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr15:44783200-44827800	Weak transcription	NHLF	lung
29	chr15:44783400-44795600	Weak transcription	Brain Cingulate Gyrus	brain
30	chr15:44783600-44828000	Weak transcription	HSMMtube	muscle
31	chr15:44783800-44794800	Weak transcription	K562	blood
32	chr15:44783800-44795600	Weak transcription	Fetal Kidney	kidney
33	chr15:44783800-44816400	Weak transcription	HMEC	breast
34	chr15:44784000-44799800	Weak transcription	Osteobl	bone
35	chr15:44784600-44795800	Weak transcription	Right Ventricle	heart
36	chr15:44785600-44794600	Weak transcription	HSMM	muscle
37	chr15:44785800-44794800	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr15:44785800-44804800	Weak transcription	Fetal Heart	heart
39	chr15:44787200-44801000	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr15:44788800-44795600	Weak transcription	Ovary	ovary
41	chr15:44789400-44799800	Weak transcription	NHDF-Ad	bronchial
42	chr15:44790400-44827200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr15:44790600-44795800	Weak transcription	Colon Smooth Muscle	Colon
44	chr15:44790800-44795000	Weak transcription	HUVEC	blood vessel
45	chr15:44790800-44795400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr15:44790800-44795400	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr15:44790800-44795600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr15:44790800-44795600	Weak transcription	Spleen	Spleen
49	chr15:44790800-44795800	Weak transcription	Primary T cells from cord blood	blood
50	chr15:44790800-44807000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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