Variant report

Variant	rs16965084
Chromosome Location	chr15:33406306-33406307
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10519795	0.87[AMR][1000 genomes]
rs11852764	1.00[ASN][1000 genomes]
rs11855782	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11855805	1.00[ASN][1000 genomes]
rs2339190	0.86[JPT][hapmap];1.00[EUR][1000 genomes]
rs28435877	1.00[EUR][1000 genomes]
rs56815735	1.00[EUR][1000 genomes]
rs7181962	0.86[JPT][hapmap]
rs722150	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903979	chr15:33144202-33550256	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1052966	chr15:33149753-33541951	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv542340	chr15:33149753-33541951	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv903981	chr15:33207082-33550256	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv568918	chr15:33244672-33446971	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv903982	chr15:33282844-33616150	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv903983	chr15:33388030-33550256	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33403000-33406600	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr15:33403600-33407600	Weak transcription	Fetal Heart	heart
3	chr15:33403600-33411400	Weak transcription	HSMM	muscle
4	chr15:33403800-33411400	Weak transcription	HSMMtube	muscle
5	chr15:33404000-33407400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr15:33404000-33407600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr15:33404000-33407800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr15:33404000-33407800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr15:33404000-33407800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr15:33404000-33407800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr15:33404000-33408400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr15:33404800-33408000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr15:33405000-33407200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr15:33405200-33407600	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr15:33405200-33407800	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr15:33405200-33408000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr15:33405200-33409400	Weak transcription	Fetal Kidney	kidney
18	chr15:33405400-33407800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr15:33405600-33406400	Flanking Active TSS	NHLF	lung
20	chr15:33405800-33406400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr15:33405800-33406400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr15:33405800-33406400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr15:33405800-33406400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr15:33405800-33406400	Flanking Active TSS	Placenta	Placenta
25	chr15:33405800-33406400	Enhancers	Pancreas	Pancrea
26	chr15:33405800-33406800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr15:33405800-33407000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr15:33405800-33407800	Enhancers	Fetal Lung	lung
29	chr15:33406000-33406400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr15:33406000-33406400	Enhancers	Osteobl	bone
31	chr15:33406000-33406600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr15:33406000-33406600	Enhancers	NHEK	skin
33	chr15:33406000-33406800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr15:33406000-33407000	Enhancers	HMEC	breast
35	chr15:33406200-33406400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr15:33406200-33406400	Enhancers	Hela-S3	cervix
37	chr15:33406200-33408000	Enhancers	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links