Variant report

Variant	rs28435877
Chromosome Location	chr15:33411453-33411454
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11855782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16965084	1.00[EUR][1000 genomes]
rs2339190	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2468747	0.94[ASN][1000 genomes]
rs2468753	0.94[ASN][1000 genomes]
rs28459535	0.94[ASN][1000 genomes]
rs56815735	1.00[EUR][1000 genomes]
rs7174593	0.92[ASN][1000 genomes]
rs7181962	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs722150	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903979	chr15:33144202-33550256	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1052966	chr15:33149753-33541951	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv542340	chr15:33149753-33541951	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv903981	chr15:33207082-33550256	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv568918	chr15:33244672-33446971	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv903982	chr15:33282844-33616150	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv903983	chr15:33388030-33550256	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33406400-33418200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr15:33406800-33418400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr15:33407000-33418400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr15:33408000-33412400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr15:33408000-33415800	Weak transcription	NHLF	lung
6	chr15:33408000-33416200	Weak transcription	Fetal Muscle Leg	muscle
7	chr15:33408800-33412000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr15:33409400-33411800	Active TSS	Fetal Kidney	kidney
9	chr15:33410000-33411600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr15:33411200-33411800	Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr15:33411400-33411800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr15:33411400-33411800	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr15:33411400-33411800	Enhancers	Placenta	Placenta
14	chr15:33411400-33411800	Enhancers	Fetal Thymus	thymus
15	chr15:33411400-33411800	Enhancers	Ovary	ovary
16	chr15:33411400-33411800	Enhancers	Pancreas	Pancrea
17	chr15:33411400-33411800	Flanking Active TSS	HSMM	muscle
18	chr15:33411400-33411800	Enhancers	HSMMtube	muscle
19	chr15:33411400-33412000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr15:33411400-33412600	Enhancers	Fetal Lung	lung
21	chr15:33411400-33412800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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