Variant report

Variant	rs16967508
Chromosome Location	chr15:76083949-76083950
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs12102136	1.00[EUR][1000 genomes]
rs28372561	1.00[EUR][1000 genomes]
rs28395383	1.00[EUR][1000 genomes]
rs28396803	1.00[EUR][1000 genomes]
rs28398053	1.00[EUR][1000 genomes]
rs28412110	1.00[EUR][1000 genomes]
rs28413637	1.00[EUR][1000 genomes]
rs28414758	1.00[EUR][1000 genomes]
rs28420558	1.00[EUR][1000 genomes]
rs28432282	1.00[EUR][1000 genomes]
rs28447345	1.00[EUR][1000 genomes]
rs28450740	1.00[EUR][1000 genomes]
rs28461701	1.00[EUR][1000 genomes]
rs28504376	1.00[EUR][1000 genomes]
rs28505697	1.00[EUR][1000 genomes]
rs28510991	1.00[EUR][1000 genomes]
rs28519586	1.00[EUR][1000 genomes]
rs28521156	1.00[EUR][1000 genomes]
rs28530778	1.00[EUR][1000 genomes]
rs28533248	1.00[EUR][1000 genomes]
rs28550881	1.00[EUR][1000 genomes]
rs28567605	1.00[EUR][1000 genomes]
rs28628290	1.00[EUR][1000 genomes]
rs28628820	1.00[EUR][1000 genomes]
rs28645531	1.00[EUR][1000 genomes]
rs28664638	1.00[EUR][1000 genomes]
rs28677951	1.00[EUR][1000 genomes]
rs28695912	1.00[EUR][1000 genomes]
rs28711283	1.00[EUR][1000 genomes]
rs28727341	1.00[EUR][1000 genomes]
rs58840197	1.00[EUR][1000 genomes]
rs60159975	1.00[EUR][1000 genomes]
rs73442996	1.00[EUR][1000 genomes]
rs74026527	1.00[EUR][1000 genomes]
rs8026666	1.00[EUR][1000 genomes]
rs8033538	1.00[EUR][1000 genomes]
rs8041384	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv527186	chr15:75924443-76107730	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
3	nsv974599	chr15:76033068-76101142	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv904397	chr15:76072030-76119092	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76075600-76085000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:76079200-76103000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:76083600-76084000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:76083800-76084000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:76083800-76084000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr15:76083800-76084000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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