Variant report

Variant	rs58840197
Chromosome Location	chr15:76127046-76127047
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12102136	1.00[EUR][1000 genomes]
rs16967508	1.00[EUR][1000 genomes]
rs28372561	1.00[EUR][1000 genomes]
rs28395383	1.00[EUR][1000 genomes]
rs28396803	1.00[EUR][1000 genomes]
rs28398053	1.00[EUR][1000 genomes]
rs28412110	1.00[EUR][1000 genomes]
rs28413637	1.00[EUR][1000 genomes]
rs28414758	1.00[EUR][1000 genomes]
rs28420558	1.00[EUR][1000 genomes]
rs28432282	1.00[EUR][1000 genomes]
rs28447345	1.00[EUR][1000 genomes]
rs28450740	1.00[EUR][1000 genomes]
rs28461701	1.00[EUR][1000 genomes]
rs28504376	1.00[EUR][1000 genomes]
rs28505697	1.00[EUR][1000 genomes]
rs28510991	1.00[EUR][1000 genomes]
rs28519586	1.00[EUR][1000 genomes]
rs28521156	1.00[EUR][1000 genomes]
rs28530778	1.00[EUR][1000 genomes]
rs28533248	1.00[EUR][1000 genomes]
rs28550881	1.00[EUR][1000 genomes]
rs28567605	1.00[EUR][1000 genomes]
rs28628290	1.00[EUR][1000 genomes]
rs28628820	1.00[EUR][1000 genomes]
rs28645531	1.00[EUR][1000 genomes]
rs28664638	1.00[EUR][1000 genomes]
rs28677951	1.00[EUR][1000 genomes]
rs28695912	1.00[EUR][1000 genomes]
rs28711283	1.00[EUR][1000 genomes]
rs28727341	1.00[EUR][1000 genomes]
rs57147636	1.00[AMR][1000 genomes]
rs60159975	1.00[EUR][1000 genomes]
rs73442996	1.00[EUR][1000 genomes]
rs73449215	1.00[AMR][1000 genomes]
rs74026527	1.00[EUR][1000 genomes]
rs8026666	1.00[EUR][1000 genomes]
rs8033538	1.00[EUR][1000 genomes]
rs8041384	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1044733	chr15:76120924-76228880	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76121200-76128000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr15:76124000-76128400	Weak transcription	HSMM	muscle
3	chr15:76124200-76129400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:76124600-76129000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr15:76124600-76129000	Weak transcription	HSMMtube	muscle
6	chr15:76124600-76129200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr15:76124800-76127800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr15:76124800-76128000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr15:76124800-76128200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr15:76124800-76129400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr15:76124800-76129600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr15:76125000-76127800	Weak transcription	HMEC	breast
13	chr15:76125000-76128000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr15:76125000-76128000	Weak transcription	NHEK	skin
15	chr15:76125200-76129000	Weak transcription	K562	blood
16	chr15:76125200-76134800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr15:76126200-76135000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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