Variant report

Variant	rs57147636
Chromosome Location	chr15:76127983-76127984
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76117468..76119700-chr15:76124793..76128384,3	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs58840197	1.00[AMR][1000 genomes]
rs73449215	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1044733	chr15:76120924-76228880	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76121200-76128000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr15:76124000-76128400	Weak transcription	HSMM	muscle
3	chr15:76124200-76129400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:76124600-76129000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr15:76124600-76129000	Weak transcription	HSMMtube	muscle
6	chr15:76124600-76129200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr15:76124800-76128000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr15:76124800-76128200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr15:76124800-76129400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr15:76124800-76129600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr15:76125000-76128000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr15:76125000-76128000	Weak transcription	NHEK	skin
13	chr15:76125200-76129000	Weak transcription	K562	blood
14	chr15:76125200-76134800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr15:76126200-76135000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr15:76127400-76129000	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr15:76127400-76130600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr15:76127800-76130000	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr15:76127800-76130000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr15:76127800-76130600	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr15:76127800-76132000	Enhancers	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links