Variant report

Variant	rs16967622
Chromosome Location	chr15:39157602-39157603
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:39154715..39156737-chr15:39157006..39160001,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FSIP1-5	chr15:39156696-39157923	XLOC_011434
2	lnc-FSIP1-5	chr15:39157523-39157923	ENSG00000259345.1
3	lnc-FSIP1-4	chr15:39157029-39157923	NONHSAT041724

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs56743656	1.00[EUR][1000 genomes]
rs59091471	1.00[EUR][1000 genomes]
rs59893511	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73396131	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73396135	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73396137	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8030637	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046994	chr15:38806163-39239014	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv832975	chr15:39011915-39227590	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1054810	chr15:39019900-39578526	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv542359	chr15:39019900-39578526	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv1039615	chr15:39118263-39157687	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1046027	chr15:39126735-39159867	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1040746	chr15:39126735-39327690	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv904090	chr15:39138908-39347192	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39152800-39160800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr15:39153800-39159800	Weak transcription	Fetal Intestine Large	intestine
3	chr15:39154200-39159600	Weak transcription	Fetal Intestine Small	intestine
4	chr15:39154400-39159000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr15:39155400-39158200	Enhancers	Ovary	ovary
6	chr15:39155400-39172600	Weak transcription	Pancreas	Pancrea
7	chr15:39156400-39157800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:39156400-39157800	Enhancers	Fetal Stomach	stomach
9	chr15:39156400-39158000	Enhancers	HSMM	muscle
10	chr15:39156400-39158200	Enhancers	Osteobl	bone
11	chr15:39156400-39158600	Enhancers	NHLF	lung
12	chr15:39156600-39157800	Enhancers	Adipose Nuclei	Adipose
13	chr15:39156600-39157800	Enhancers	Fetal Kidney	kidney
14	chr15:39156600-39157800	Enhancers	HSMMtube	muscle
15	chr15:39156600-39158200	Enhancers	Muscle Satellite Cultured Cells	--
16	chr15:39156600-39158200	Enhancers	Fetal Muscle Leg	muscle
17	chr15:39156600-39158400	Enhancers	Placenta	Placenta
18	chr15:39156800-39165200	Weak transcription	Lung	lung
19	chr15:39157200-39158000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr15:39157200-39158400	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr15:39157200-39161000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr15:39157400-39157800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr15:39157400-39157800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr15:39157400-39157800	Enhancers	Fetal Heart	heart
25	chr15:39157400-39158200	Enhancers	NHDF-Ad	bronchial
26	chr15:39157400-39158400	Weak transcription	Left Ventricle	heart
27	chr15:39157400-39159200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr15:39157400-39161400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr15:39157600-39160200	Weak transcription	NH-A	brain

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