Variant report

Variant	rs16968016
Chromosome Location	chr15:76526410-76526411
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:76525218..76527254-chr15:76603295..76605349,2	MCF-7	breast:
2	chr15:76524104..76526710-chr15:76623821..76625694,2	K562	blood:
3	chr15:76515308..76517340-chr15:76524371..76526709,2	MCF-7	breast:
4	chr15:76523878..76527250-chr15:76601184..76604398,3	K562	blood:
5	chr15:76524104..76527148-chr15:76623821..76625801,3	K562	blood:
6	chr15:76526052..76529380-chr15:76531494..76534589,4	K562	blood:
7	chr15:76526195..76528396-chr15:77157837..77159918,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140374	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs56215269	0.80[ASN][1000 genomes]
rs57634299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72475988	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569998	chr15:76232605-76550938	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76499200-76527400	Weak transcription	Fetal Brain Male	brain
2	chr15:76500600-76534800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr15:76503600-76551400	Weak transcription	Small Intestine	intestine
4	chr15:76506000-76526800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:76506200-76526800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr15:76507200-76551400	Weak transcription	Brain Hippocampus Middle	brain
7	chr15:76508400-76546000	Weak transcription	Brain Anterior Caudate	brain
8	chr15:76510000-76534600	Weak transcription	Brain Substantia Nigra	brain
9	chr15:76510200-76555400	Weak transcription	Psoas Muscle	Psoas
10	chr15:76510400-76538000	Weak transcription	HUVEC	blood vessel
11	chr15:76510400-76538200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr15:76510400-76555000	Weak transcription	NH-A	brain
13	chr15:76513200-76559400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr15:76513800-76551400	Weak transcription	Stomach Mucosa	stomach
15	chr15:76516400-76550600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr15:76517200-76551800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr15:76517400-76532600	Weak transcription	HSMM	muscle
18	chr15:76517400-76544600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr15:76517400-76549200	Weak transcription	Fetal Kidney	kidney
20	chr15:76517400-76550600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr15:76517400-76550600	Weak transcription	Pancreas	Pancrea
22	chr15:76517400-76559400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr15:76517600-76526800	Weak transcription	Esophagus	oesophagus
24	chr15:76517600-76528000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr15:76517600-76528400	Weak transcription	Spleen	Spleen
26	chr15:76517600-76530400	Weak transcription	Colon Smooth Muscle	Colon
27	chr15:76517600-76550600	Weak transcription	Aorta	Aorta
28	chr15:76517600-76550600	Weak transcription	Ovary	ovary
29	chr15:76517600-76551200	Weak transcription	Right Ventricle	heart
30	chr15:76517600-76551400	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr15:76517600-76553800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr15:76518200-76532400	Weak transcription	A549	lung
33	chr15:76518200-76534600	Weak transcription	Stomach Smooth Muscle	stomach
34	chr15:76518200-76534800	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr15:76518200-76550400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr15:76518400-76526800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr15:76518600-76538600	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr15:76520000-76535200	Weak transcription	Fetal Intestine Small	intestine
39	chr15:76520400-76528400	Weak transcription	Osteobl	bone
40	chr15:76520600-76532200	Weak transcription	Brain Angular Gyrus	brain
41	chr15:76521000-76534600	Weak transcription	Dnd41	blood
42	chr15:76521400-76551600	Weak transcription	Left Ventricle	heart
43	chr15:76522400-76527400	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr15:76522400-76554400	Weak transcription	Fetal Heart	heart
45	chr15:76522600-76529600	Weak transcription	Fetal Stomach	stomach
46	chr15:76523600-76526800	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr15:76523600-76526800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr15:76523600-76529200	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr15:76523600-76530400	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr15:76523600-76532200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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