Variant report

Variant	rs72475988
Chromosome Location	chr15:76555421-76555422
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr15:76555169-76555446	U2OS	brain:	n/a	n/a
2	SETDB1	chr15:76555214-76555844	K562	blood:	n/a	n/a
3	CBX3	chr15:76555330-76555878	K562	blood:	n/a	n/a
4	SETDB1	chr15:76555073-76555788	K562	blood:	n/a	n/a
5	ZNF143	chr15:76555372-76555762	K562	blood:	n/a	n/a
6	KAP1	chr15:76555110-76556096	K562	blood:	n/a	n/a
7	CBX3	chr15:76555019-76555912	K562	blood:	n/a	n/a
8	TAL1	chr15:76555259-76555546	K562	blood:	n/a	n/a
9	EP300	chr15:76555255-76555551	K562	blood:	n/a	n/a
10	ZNF143	chr15:76555408-76555763	H1-hESC	embryonic stem cell:	n/a	n/a
11	TRIM28	chr15:76555090-76555854	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76554323..76556286-chr15:76566730..76568876,2	K562	blood:

Variant related genes	Relation type
TYRO3P	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16968016	0.85[ASN][1000 genomes]
rs56215269	0.95[ASN][1000 genomes]
rs57634299	0.81[ASN][1000 genomes]
rs59467462	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv527608	chr15:76530267-76562738	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76513200-76559400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr15:76517400-76559400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr15:76539000-76555600	Weak transcription	HUVEC	blood vessel
4	chr15:76546200-76556000	Strong transcription	A549	lung
5	chr15:76546800-76558200	Weak transcription	Brain Angular Gyrus	brain
6	chr15:76550400-76563000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr15:76550600-76555800	Strong transcription	HepG2	liver
8	chr15:76550600-76557400	Strong transcription	Stomach Smooth Muscle	stomach
9	chr15:76550600-76559200	ZNF genes & repeats	Fetal Stomach	stomach
10	chr15:76550600-76560400	ZNF genes & repeats	Fetal Intestine Large	intestine
11	chr15:76550600-76562600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
12	chr15:76550600-76563000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
13	chr15:76550600-76563200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr15:76550600-76563400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr15:76550600-76563400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr15:76550600-76563600	ZNF genes & repeats	Fetal Intestine Small	intestine
17	chr15:76550600-76564000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
18	chr15:76550600-76578400	Strong transcription	Liver	Liver
19	chr15:76551800-76555600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr15:76552000-76559400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr15:76553200-76555800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr15:76553200-76558800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
23	chr15:76553400-76562800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr15:76553400-76563200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
25	chr15:76553600-76560800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
26	chr15:76553600-76561000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
27	chr15:76553600-76563200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr15:76553800-76556200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr15:76553800-76556800	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
30	chr15:76553800-76558200	ZNF genes & repeats	Fetal Brain Female	brain
31	chr15:76553800-76562600	ZNF genes & repeats	Primary B cells from cord blood	blood
32	chr15:76553800-76564200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr15:76554000-76560200	Weak transcription	Gastric	stomach
34	chr15:76554000-76560400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
35	chr15:76554000-76563800	ZNF genes & repeats	Dnd41	blood
36	chr15:76554200-76556000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
37	chr15:76554200-76556200	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr15:76554200-76561600	ZNF genes & repeats	Fetal Muscle Leg	muscle
39	chr15:76554200-76562600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
40	chr15:76554200-76562600	ZNF genes & repeats	Fetal Lung	lung
41	chr15:76554400-76556400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr15:76554400-76557600	ZNF genes & repeats	Fetal Heart	heart
43	chr15:76554600-76555800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr15:76554600-76556200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
45	chr15:76554600-76556200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
46	chr15:76554600-76557000	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
47	chr15:76554600-76557400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
48	chr15:76554600-76560600	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
49	chr15:76554600-76563000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
50	chr15:76555000-76555800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links