Variant report

Variant	rs16968729
Chromosome Location	chr16:65258244-65258245
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1862709	1.00[EUR][1000 genomes]
rs35498940	0.82[ASN][1000 genomes]
rs35681741	0.86[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs57212882	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7201346	1.00[EUR][1000 genomes]
rs74026258	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34131	chr16:65137094-65379496	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv431509	chr16:65211408-65302840	Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv525526	chr16:65257891-65308021	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv906776	chr16:65257891-65315175	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16968729	PPARG	trans	lymphoblastoid	seeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:65254200-65263000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr16:65256600-65258400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
3	chr16:65256600-65259400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr16:65257400-65259000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr16:65257600-65258600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr16:65257600-65258600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr16:65257600-65265200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr16:65258000-65258400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr16:65258000-65258400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr16:65258000-65258400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr16:65258000-65261800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr16:65258200-65258600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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