Variant report

Variant	rs57212882
Chromosome Location	chr16:65267618-65267619
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16968729	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1862709	1.00[EUR][1000 genomes]
rs35498940	0.92[ASN][1000 genomes]
rs35681741	0.92[ASN][1000 genomes]
rs7201346	1.00[EUR][1000 genomes]
rs74026258	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34131	chr16:65137094-65379496	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv431509	chr16:65211408-65302840	Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv525526	chr16:65257891-65308021	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv906776	chr16:65257891-65315175	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv906777	chr16:65263401-65312933	Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:65261600-65269800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr16:65263400-65269200	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr16:65263600-65269400	Active TSS	H1 Cell Line	embryonic stem cell
4	chr16:65264200-65269200	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr16:65265000-65267800	Active TSS	iPS-18 Cell Line	embryonic stem cell
6	chr16:65265200-65269000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr16:65265200-65269200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr16:65265800-65269200	Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr16:65266000-65268800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr16:65266200-65268800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
11	chr16:65266400-65269200	Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr16:65267200-65267800	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
13	chr16:65267200-65268600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
14	chr16:65267200-65269000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr16:65267400-65267800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr16:65267600-65267800	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr16:65267600-65267800	Transcr. at gene 5' and 3'	H9 Cell Line	embryonic stem cell
18	chr16:65267600-65268200	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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