Variant report

Variant	rs16968835
Chromosome Location	chr15:77734261-77734262
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:77729375..77731568-chr15:77731785..77734606,3	K562	blood:
2	chr15:77734206..77736297-chr15:77744808..77747218,2	K562	blood:
3	chr15:77731986..77734609-chr15:77750032..77751722,2	MCF-7	breast:
4	chr15:77710965..77713678-chr15:77732799..77735458,2	MCF-7	breast:
5	chr15:77712579..77715186-chr15:77732353..77734903,2	K562	blood:

Variant related genes	Relation type
ENSG00000140382	Chromatin interaction
ENSG00000173517	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10519164	0.82[AMR][1000 genomes]
rs10519167	1.00[CEU][hapmap];0.92[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11629652	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11629835	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11632729	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11636412	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11639308	0.82[AMR][1000 genomes]
rs12898281	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12898370	0.85[JPT][hapmap]
rs12898656	0.84[JPT][hapmap]
rs12902896	0.84[JPT][hapmap]
rs12910951	0.84[JPT][hapmap]
rs12911649	0.92[JPT][hapmap]
rs12911963	0.85[JPT][hapmap]
rs12916682	0.84[JPT][hapmap]
rs12916973	0.84[JPT][hapmap]
rs1554051	0.82[AMR][1000 genomes]
rs17385550	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17385648	0.82[AMR][1000 genomes]
rs17469276	0.82[AMR][1000 genomes]
rs17470228	0.82[AMR][1000 genomes]
rs34194537	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34981488	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35235292	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35268067	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35490414	0.82[AMR][1000 genomes]
rs35902242	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55716459	0.84[AMR][1000 genomes]
rs62007263	0.82[AMR][1000 genomes]
rs7119	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs7162362	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs8032071	1.00[CEU][hapmap];0.92[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8040318	0.84[JPT][hapmap]
rs8040702	0.86[JPT][hapmap]
rs8042307	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77714000-77748600	Weak transcription	Placenta	Placenta
2	chr15:77714400-77739200	Weak transcription	Right Atrium	heart
3	chr15:77714400-77741600	Weak transcription	Fetal Thymus	thymus
4	chr15:77714600-77734400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr15:77714800-77739200	Weak transcription	Fetal Intestine Small	intestine
6	chr15:77715000-77740600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr15:77715400-77737800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr15:77716400-77741400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr15:77716800-77738000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr15:77716800-77742600	Weak transcription	Hela-S3	cervix
11	chr15:77717000-77754400	Weak transcription	K562	blood
12	chr15:77717200-77739400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr15:77720000-77739400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr15:77720200-77743000	Weak transcription	Primary B cells from cord blood	blood
15	chr15:77723200-77738000	Weak transcription	Right Ventricle	heart
16	chr15:77727200-77741200	Weak transcription	Fetal Stomach	stomach
17	chr15:77727400-77747800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr15:77728000-77737600	Weak transcription	Left Ventricle	heart
19	chr15:77728200-77746200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr15:77728400-77738000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr15:77729200-77740600	Weak transcription	Fetal Muscle Leg	muscle
22	chr15:77729400-77747200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr15:77729600-77748000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr15:77729600-77749200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr15:77729800-77740600	Weak transcription	Primary B cells from peripheral blood	blood
26	chr15:77729800-77747200	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr15:77730400-77748600	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr15:77730600-77740200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr15:77730600-77758800	Weak transcription	Lung	lung
30	chr15:77732000-77735000	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr15:77732600-77734600	Enhancers	Fetal Heart	heart
32	chr15:77732600-77735200	Enhancers	Pancreatic Islets	Pancreatic Islet
33	chr15:77732800-77734400	Enhancers	Duodenum Smooth Muscle	Duodenum
34	chr15:77733000-77734600	Enhancers	Stomach Mucosa	stomach
35	chr15:77733000-77735200	Enhancers	Colon Smooth Muscle	Colon
36	chr15:77733200-77734600	Enhancers	Duodenum Mucosa	Duodenum
37	chr15:77733200-77734800	Enhancers	Liver	Liver
38	chr15:77733200-77734800	Enhancers	GM12878-XiMat	blood
39	chr15:77733200-77735200	Enhancers	Primary T cells from cord blood	blood
40	chr15:77733200-77736400	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr15:77733200-77739600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr15:77733200-77744600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr15:77733200-77748000	Weak transcription	HMEC	breast
44	chr15:77733200-77749200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr15:77733200-77750200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr15:77733400-77741600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr15:77733400-77746800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr15:77733400-77747000	Weak transcription	NH-A	brain
49	chr15:77733400-77747000	Weak transcription	NHDF-Ad	bronchial
50	chr15:77733600-77735000	Weak transcription	Small Intestine	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links