Variant report

Variant	rs34194537
Chromosome Location	chr15:77795761-77795762
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:77447640..77449355-chr15:77793706..77796059,2	MCF-7	breast:
2	chr15:77481285..77483374-chr15:77795738..77797524,2	MCF-7	breast:
3	chr15:77786574..77788334-chr15:77795705..77797965,2	MCF-7	breast:
4	chr15:77795040..77797177-chr15:77834449..77837320,2	MCF-7	breast:
5	chr15:77795420..77798597-chr15:77834386..77837370,5	MCF-7	breast:
6	chr15:77793912..77796870-chr15:77807695..77810216,2	MCF-7	breast:
7	chr15:77793877..77796515-chr15:77817397..77819668,3	MCF-7	breast:
8	chr15:77788815..77791032-chr15:77793939..77797001,3	MCF-7	breast:
9	chr15:77789779..77791418-chr15:77794224..77796698,3	MCF-7	breast:
10	chr15:77710223..77714353-chr15:77793653..77797346,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000259362	Chromatin interaction
ENSG00000173517	Chromatin interaction
ENSG00000140382	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10519164	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10519167	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11629652	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11629835	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11632602	0.91[ASN][1000 genomes]
rs11632729	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11634174	0.91[ASN][1000 genomes]
rs11636412	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11639293	0.91[ASN][1000 genomes]
rs11639308	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12898281	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12898370	0.94[ASN][1000 genomes]
rs12898656	0.94[ASN][1000 genomes]
rs12899552	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12901338	0.94[ASN][1000 genomes]
rs12902698	0.94[ASN][1000 genomes]
rs12902852	0.94[ASN][1000 genomes]
rs12902896	0.94[ASN][1000 genomes]
rs12902912	0.94[ASN][1000 genomes]
rs12904254	0.94[ASN][1000 genomes]
rs12910951	0.94[ASN][1000 genomes]
rs12911649	0.85[ASN][1000 genomes]
rs12911963	0.94[ASN][1000 genomes]
rs12916682	0.94[ASN][1000 genomes]
rs12916973	0.94[ASN][1000 genomes]
rs1554051	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs16968835	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17385550	0.82[AMR][1000 genomes]
rs17385648	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs17469276	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17470228	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs34981488	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35235292	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35268067	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35284122	0.94[ASN][1000 genomes]
rs35490414	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs35902242	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55716459	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs62007263	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs62007348	0.94[ASN][1000 genomes]
rs62007350	0.94[ASN][1000 genomes]
rs71407208	0.80[ASN][1000 genomes]
rs7162362	0.82[AMR][1000 genomes]
rs8027056	0.87[ASN][1000 genomes]
rs8032071	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8040318	0.94[ASN][1000 genomes]
rs8040702	0.94[ASN][1000 genomes]
rs8042307	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv1043284	chr15:77740632-77884026	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv570139	chr15:77762493-77865459	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
7	nsv570140	chr15:77787469-77851535	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77777600-77798600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr15:77786200-77800000	Weak transcription	Thymus	Thymus
3	chr15:77786400-77799600	Weak transcription	Primary B cells from cord blood	blood
4	chr15:77786400-77803800	Weak transcription	Primary T cells from cord blood	blood
5	chr15:77789800-77796400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr15:77789800-77798600	Weak transcription	Gastric	stomach
7	chr15:77789800-77799600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr15:77789800-77801000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr15:77790200-77799200	Weak transcription	Primary B cells from peripheral blood	blood
10	chr15:77790600-77799200	Weak transcription	GM12878-XiMat	blood
11	chr15:77791000-77796000	Weak transcription	Liver	Liver
12	chr15:77791000-77797000	Weak transcription	Lung	lung
13	chr15:77791000-77797400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr15:77791000-77797400	Weak transcription	Pancreas	Pancrea
15	chr15:77791000-77797800	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr15:77791000-77798600	Weak transcription	HSMM	muscle
17	chr15:77791000-77798800	Weak transcription	Fetal Intestine Large	intestine
18	chr15:77791200-77796200	Weak transcription	Esophagus	oesophagus
19	chr15:77791200-77796800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr15:77791200-77797000	Weak transcription	Fetal Intestine Small	intestine
21	chr15:77791600-77796000	Weak transcription	Spleen	Spleen
22	chr15:77791600-77797000	Weak transcription	Fetal Brain Female	brain
23	chr15:77791600-77798600	Weak transcription	Fetal Kidney	kidney
24	chr15:77791600-77798800	Weak transcription	Rectal Smooth Muscle	rectum
25	chr15:77791600-77798800	Weak transcription	Osteobl	bone
26	chr15:77791600-77799000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr15:77791800-77796000	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr15:77791800-77797000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr15:77791800-77798200	Weak transcription	Fetal Thymus	thymus
30	chr15:77792000-77795800	Weak transcription	Brain Angular Gyrus	brain
31	chr15:77792000-77795800	Weak transcription	Brain Substantia Nigra	brain
32	chr15:77792000-77795800	Weak transcription	Fetal Brain Male	brain
33	chr15:77792000-77795800	Weak transcription	Psoas Muscle	Psoas
34	chr15:77792000-77796200	Weak transcription	Brain Hippocampus Middle	brain
35	chr15:77792000-77796600	Weak transcription	Adipose Nuclei	Adipose
36	chr15:77792000-77796800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr15:77792000-77798800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr15:77792000-77799200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr15:77792200-77795800	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr15:77792200-77796000	Weak transcription	Fetal Lung	lung
41	chr15:77792200-77796200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr15:77792200-77796200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr15:77792200-77796400	Weak transcription	Fetal Stomach	stomach
44	chr15:77792200-77796600	Weak transcription	Fetal Heart	heart
45	chr15:77792200-77797000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr15:77792400-77795800	Weak transcription	Fetal Muscle Trunk	muscle
47	chr15:77792400-77795800	Weak transcription	Fetal Muscle Leg	muscle
48	chr15:77792400-77797000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr15:77793800-77795800	Weak transcription	Brain Cingulate Gyrus	brain
50	chr15:77793800-77795800	Weak transcription	Brain Inferior Temporal Lobe	brain

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