Variant report

Variant	rs16970335
Chromosome Location	chr16:70614008-70614009
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:70559871..70561537-chr16:70612058..70614410,2	K562	blood:
2	chr16:70613262..70615698-chr16:70787061..70789499,2	K562	blood:
3	chr16:70573143..70576086-chr16:70612689..70614684,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000214353	Chromatin interaction
ENSG00000189091	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11865368	1.00[AMR][1000 genomes]
rs11867150	0.91[YRI][hapmap]
rs13335135	1.00[ASW][hapmap]
rs16970133	1.00[EUR][1000 genomes]
rs16970149	1.00[EUR][1000 genomes]
rs16970151	1.00[EUR][1000 genomes]
rs16970152	1.00[EUR][1000 genomes]
rs16970153	1.00[EUR][1000 genomes]
rs16970154	0.82[YRI][hapmap]
rs16970159	1.00[EUR][1000 genomes]
rs16970165	1.00[EUR][1000 genomes]
rs16970191	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs16970331	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17878832	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17879608	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17880242	1.00[AMR][1000 genomes]
rs17880392	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17881069	0.85[AFR][1000 genomes]
rs17882800	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17883309	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17885493	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3852697	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3852698	0.81[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4999489	1.00[AMR][1000 genomes]
rs56348821	1.00[EUR][1000 genomes]
rs57150196	1.00[EUR][1000 genomes]
rs59552467	1.00[EUR][1000 genomes]
rs60011151	1.00[EUR][1000 genomes]
rs60387488	1.00[EUR][1000 genomes]
rs61284127	1.00[EUR][1000 genomes]
rs61369696	1.00[EUR][1000 genomes]
rs6499313	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6499315	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6499316	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6499319	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7195104	1.00[EUR][1000 genomes]
rs7196295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7199043	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7203548	1.00[EUR][1000 genomes]
rs7203761	1.00[EUR][1000 genomes]
rs74026026	1.00[EUR][1000 genomes]
rs8044110	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8044956	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8050252	1.00[EUR][1000 genomes]
rs8053883	1.00[EUR][1000 genomes]
rs8058032	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8064090	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70607600-70615400	Weak transcription	Fetal Heart	heart
2	chr16:70608000-70624600	Weak transcription	Pancreas	Pancrea
3	chr16:70608800-70616000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr16:70609000-70628000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr16:70609800-70616200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr16:70609800-70623800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr16:70610000-70623800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr16:70611400-70616200	Weak transcription	Right Atrium	heart
9	chr16:70611600-70617800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr16:70612400-70614400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr16:70613200-70614200	Enhancers	K562	blood
12	chr16:70613200-70614200	Enhancers	NHEK	skin
13	chr16:70613200-70614400	Enhancers	Fetal Intestine Small	intestine
14	chr16:70613200-70614400	Enhancers	Fetal Muscle Leg	muscle
15	chr16:70613200-70614400	Enhancers	Fetal Stomach	stomach
16	chr16:70613200-70614600	Enhancers	Fetal Intestine Large	intestine
17	chr16:70613400-70614200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr16:70613400-70614200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr16:70613400-70614200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr16:70613400-70614200	Flanking Active TSS	Rectal Smooth Muscle	rectum
21	chr16:70613400-70614200	Enhancers	HSMMtube	muscle
22	chr16:70613400-70614400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
23	chr16:70613400-70614400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr16:70613600-70614200	Flanking Active TSS	Adipose Nuclei	Adipose
25	chr16:70613600-70614200	Flanking Active TSS	Colonic Mucosa	Colon
26	chr16:70613600-70614200	Flanking Bivalent TSS/Enh	HepG2	liver
27	chr16:70613600-70614600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr16:70613800-70614200	Flanking Active TSS	Colon Smooth Muscle	Colon
29	chr16:70613800-70614200	Flanking Active TSS	Duodenum Mucosa	Duodenum
30	chr16:70613800-70614200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
31	chr16:70613800-70614200	Flanking Active TSS	Left Ventricle	heart
32	chr16:70613800-70614200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
33	chr16:70613800-70614200	Active TSS	Skeletal Muscle Female	skeletal muscle
34	chr16:70613800-70614200	Flanking Active TSS	Stomach Smooth Muscle	stomach
35	chr16:70613800-70614200	Active TSS	Spleen	Spleen
36	chr16:70613800-70614400	Active TSS	Esophagus	oesophagus
37	chr16:70613800-70614400	Flanking Active TSS	Fetal Muscle Trunk	muscle
38	chr16:70613800-70618000	Weak transcription	NHDF-Ad	bronchial
39	chr16:70614000-70614200	Active TSS	Aorta	Aorta
40	chr16:70614000-70614200	Active TSS	Rectal Mucosa Donor 29	rectum
41	chr16:70614000-70614200	Bivalent Enhancer	Stomach Mucosa	stomach
42	chr16:70614000-70614400	Active TSS	Skeletal Muscle Male	skeletal muscle
43	chr16:70614000-70615400	Weak transcription	Placenta	Placenta
44	chr16:70614000-70615800	Weak transcription	Ovary	ovary
45	chr16:70614000-70616000	Weak transcription	Right Ventricle	heart
46	chr16:70614000-70618000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr16:70614000-70618000	Weak transcription	HMEC	breast
48	chr16:70614000-70624200	Weak transcription	Gastric	stomach

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