Variant report

Variant	rs7203761
Chromosome Location	chr16:70405062-70405063
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:70380932..70385143-chr16:70404657..70409914,6	MCF-7	breast:
2	chr16:70404267..70407170-chr16:70413763..70415301,2	K562	blood:
3	chr16:70403683..70405364-chr16:70556846..70558413,2	MCF-7	breast:
4	chr16:70403504..70406044-chr16:70486900..70491075,3	MCF-7	breast:
5	chr16:70402213..70407234-chr16:70407266..70410953,6	K562	blood:
6	chr16:70402213..70405460-chr16:70405653..70409896,4	K562	blood:
7	chr16:70403834..70405811-chr16:70505768..70508585,2	MCF-7	breast:
8	chr16:70403494..70406143-chr16:70569820..70571486,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000103051	Chromatin interaction
ENSG00000157353	Chromatin interaction
ENSG00000189091	Chromatin interaction

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs11859870	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11860870	1.00[MEX][hapmap]
rs11861097	1.00[EUR][1000 genomes]
rs11861486	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11862053	1.00[MEX][hapmap]
rs11863128	0.85[AMR][1000 genomes]
rs11863943	1.00[MEX][hapmap];0.92[AMR][1000 genomes]
rs11864179	0.92[AMR][1000 genomes]
rs11864326	0.84[AMR][1000 genomes]
rs11865484	0.92[AMR][1000 genomes]
rs11865564	0.84[AMR][1000 genomes]
rs16970121	1.00[ASW][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16970133	1.00[ASW][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16970141	1.00[MEX][hapmap]
rs16970147	1.00[MEX][hapmap]
rs16970149	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16970151	1.00[MEX][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16970152	1.00[MEX][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16970153	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16970159	1.00[MEX][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16970165	1.00[MEX][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16970169	1.00[MEX][hapmap];0.84[AMR][1000 genomes]
rs16970302	1.00[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap]
rs16970331	1.00[EUR][1000 genomes]
rs16970335	1.00[EUR][1000 genomes]
rs16970361	1.00[MEX][hapmap]
rs17878609	0.84[AMR][1000 genomes]
rs17879665	0.92[AMR][1000 genomes]
rs17880268	1.00[MEX][hapmap];0.84[AMR][1000 genomes]
rs17881219	1.00[MEX][hapmap];0.92[AMR][1000 genomes]
rs17882471	1.00[MEX][hapmap]
rs35904382	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4999488	0.84[AMR][1000 genomes]
rs55769835	0.92[AMR][1000 genomes]
rs55775924	0.92[AMR][1000 genomes]
rs55916527	0.92[AMR][1000 genomes]
rs55963712	1.00[EUR][1000 genomes]
rs56050266	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56082018	0.92[AMR][1000 genomes]
rs56096542	1.00[EUR][1000 genomes]
rs56348821	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56836664	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57150196	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57492770	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58047061	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58434182	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59116576	1.00[EUR][1000 genomes]
rs59260159	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59552467	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60011151	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60045805	0.85[AMR][1000 genomes]
rs60387488	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60646112	0.92[AMR][1000 genomes]
rs61284127	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61319691	0.84[AMR][1000 genomes]
rs61369696	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61391917	1.00[EUR][1000 genomes]
rs6499306	1.00[EUR][1000 genomes]
rs6499307	1.00[EUR][1000 genomes]
rs6499312	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6499314	1.00[MEX][hapmap];0.84[AMR][1000 genomes]
rs7184248	1.00[EUR][1000 genomes]
rs7184643	1.00[EUR][1000 genomes]
rs7184759	1.00[EUR][1000 genomes]
rs7188864	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7189535	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs7190536	0.92[AMR][1000 genomes]
rs7192000	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap]
rs7195086	1.00[MEX][hapmap];0.92[AMR][1000 genomes]
rs7195104	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7195567	1.00[MEX][hapmap]
rs7196392	1.00[MEX][hapmap]
rs7198871	0.93[ASW][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.96[YRI][hapmap]
rs7198923	1.00[EUR][1000 genomes]
rs7199043	1.00[EUR][1000 genomes]
rs7199145	1.00[MEX][hapmap]
rs7199346	1.00[MEX][hapmap];0.84[AMR][1000 genomes]
rs7199655	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7203548	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7203772	0.93[ASW][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes]
rs7205871	1.00[EUR][1000 genomes]
rs7205918	0.86[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.96[YRI][hapmap]
rs7205990	1.00[MEX][hapmap]
rs7206347	0.84[AMR][1000 genomes]
rs74024196	1.00[EUR][1000 genomes]
rs74026022	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs74026026	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74026033	0.84[AMR][1000 genomes]
rs74026049	0.92[AMR][1000 genomes]
rs8044699	1.00[EUR][1000 genomes]
rs8045571	1.00[MEX][hapmap]
rs8045769	1.00[EUR][1000 genomes]
rs8046253	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs8046662	1.00[MEX][hapmap]
rs8046786	1.00[YRI][hapmap]
rs8049316	1.00[MEX][hapmap]
rs8049361	1.00[EUR][1000 genomes]
rs8050252	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8053883	1.00[MEX][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8054203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8055338	1.00[MEX][hapmap]
rs8056811	0.93[ASW][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs8058032	1.00[EUR][1000 genomes]
rs8058735	0.92[AMR][1000 genomes]
rs8062602	0.84[AMR][1000 genomes]
rs9673623	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482577	chr16:70329048-70516069	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
2	nsv833272	chr16:70369769-70569723	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
3	nsv978332	chr16:70398058-70410365	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70381600-70413200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr16:70381600-70414000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr16:70382200-70413600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr16:70382600-70413000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr16:70382800-70409800	Strong transcription	Fetal Muscle Leg	muscle
6	chr16:70382800-70410800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr16:70382800-70410800	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr16:70383000-70410200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr16:70383000-70410600	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr16:70383000-70410800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr16:70383000-70413000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr16:70383000-70413000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr16:70383000-70413000	Strong transcription	Fetal Thymus	thymus
14	chr16:70383200-70412200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr16:70383200-70413000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr16:70383200-70413400	Strong transcription	Fetal Stomach	stomach
17	chr16:70383400-70410600	Strong transcription	HUES48 Cell Line	embryonic stem cell
18	chr16:70383400-70411000	Strong transcription	Primary B cells from peripheral blood	blood
19	chr16:70383400-70411000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr16:70383600-70407600	Strong transcription	HepG2	liver
21	chr16:70383600-70412200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr16:70383600-70413200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr16:70383600-70413400	Strong transcription	Fetal Muscle Trunk	muscle
24	chr16:70383600-70413600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr16:70383800-70410600	Strong transcription	Liver	Liver
26	chr16:70384400-70411000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr16:70384400-70411400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr16:70384600-70413400	Strong transcription	Fetal Intestine Small	intestine
29	chr16:70385200-70407600	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr16:70385200-70410800	Strong transcription	Duodenum Mucosa	Duodenum
31	chr16:70385200-70410800	Strong transcription	Stomach Smooth Muscle	stomach
32	chr16:70385400-70410200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr16:70385600-70407800	Strong transcription	Brain Anterior Caudate	brain
34	chr16:70385600-70410400	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr16:70385800-70410200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
36	chr16:70386000-70413400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr16:70386200-70410400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr16:70387800-70414000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr16:70388400-70407000	Strong transcription	Fetal Brain Female	brain
40	chr16:70388400-70407800	Strong transcription	Duodenum Smooth Muscle	Duodenum
41	chr16:70388400-70408200	Strong transcription	Primary T cells from cord blood	blood
42	chr16:70388400-70410400	Strong transcription	Left Ventricle	heart
43	chr16:70388400-70410600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr16:70388400-70410600	Strong transcription	HUES6 Cell Line	embryonic stem cell
45	chr16:70388400-70410600	Strong transcription	Fetal Intestine Large	intestine
46	chr16:70388400-70410600	Strong transcription	Placenta	Placenta
47	chr16:70388400-70410600	Strong transcription	Thymus	Thymus
48	chr16:70388400-70411000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr16:70388600-70410400	Strong transcription	Brain Inferior Temporal Lobe	brain
50	chr16:70388600-70410600	Strong transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links