Variant report

Variant	rs8056811
Chromosome Location	chr16:70391666-70391667
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:70386496..70388574-chr16:70391241..70393412,2	MCF-7	breast:
2	chr16:70390592..70393385-chr16:70487447..70489700,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000157353	Chromatin interaction

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs11859191	1.00[EUR][1000 genomes]
rs11859870	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs11860870	1.00[MEX][hapmap]
rs11861486	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs11862053	1.00[MEX][hapmap]
rs11862150	1.00[EUR][1000 genomes]
rs11862188	1.00[EUR][1000 genomes]
rs11863943	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs11864179	1.00[EUR][1000 genomes]
rs11865484	1.00[EUR][1000 genomes]
rs11865564	1.00[EUR][1000 genomes]
rs16970121	0.93[ASW][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16970133	0.93[ASW][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.84[AMR][1000 genomes]
rs16970141	1.00[MEX][hapmap];0.83[YRI][hapmap];0.91[AMR][1000 genomes]
rs16970147	1.00[MEX][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16970151	1.00[MEX][hapmap]
rs16970152	1.00[MEX][hapmap]
rs16970159	1.00[MEX][hapmap]
rs16970165	1.00[MEX][hapmap]
rs16970169	1.00[MEX][hapmap]
rs16970302	0.93[ASW][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];1.00[EUR][1000 genomes]
rs16970361	1.00[MEX][hapmap]
rs17878609	1.00[EUR][1000 genomes]
rs17878832	1.00[EUR][1000 genomes]
rs17880242	1.00[EUR][1000 genomes]
rs17880268	1.00[MEX][hapmap]
rs17881069	1.00[EUR][1000 genomes]
rs17881219	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs17882471	1.00[MEX][hapmap]
rs17883309	1.00[EUR][1000 genomes]
rs17886064	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3096368	1.00[EUR][1000 genomes]
rs35904382	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55657328	1.00[EUR][1000 genomes]
rs55769835	1.00[EUR][1000 genomes]
rs55805938	1.00[EUR][1000 genomes]
rs55819743	1.00[EUR][1000 genomes]
rs55936739	1.00[EUR][1000 genomes]
rs56043981	0.81[AMR][1000 genomes]
rs56050266	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56082018	1.00[EUR][1000 genomes]
rs56096542	0.81[AMR][1000 genomes]
rs56836664	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs56980444	1.00[EUR][1000 genomes]
rs57150196	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57422630	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58047061	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58055772	0.81[AMR][1000 genomes]
rs58131227	1.00[EUR][1000 genomes]
rs58328210	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58467558	1.00[EUR][1000 genomes]
rs59260159	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59384897	1.00[EUR][1000 genomes]
rs59612351	1.00[EUR][1000 genomes]
rs59791510	0.81[AMR][1000 genomes]
rs59928915	0.91[AMR][1000 genomes]
rs60426209	1.00[EUR][1000 genomes]
rs60523557	0.81[AMR][1000 genomes]
rs60815141	1.00[EUR][1000 genomes]
rs61266247	0.91[AMR][1000 genomes]
rs61319691	1.00[EUR][1000 genomes]
rs6499312	0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6499313	1.00[EUR][1000 genomes]
rs6499314	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs6499315	1.00[EUR][1000 genomes]
rs7184248	0.81[AMR][1000 genomes]
rs7188864	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7189535	0.86[ASW][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap]
rs7190536	1.00[EUR][1000 genomes]
rs7190921	1.00[EUR][1000 genomes]
rs7192000	0.93[ASW][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];1.00[EUR][1000 genomes]
rs7195086	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs7195567	1.00[MEX][hapmap]
rs7196392	1.00[MEX][hapmap]
rs7198871	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs7199145	1.00[MEX][hapmap]
rs7199346	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs7199655	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7203548	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7203761	0.93[ASW][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7203772	1.00[ASW][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7205871	0.81[AMR][1000 genomes]
rs7205918	0.81[LWK][hapmap];1.00[MEX][hapmap];0.91[YRI][hapmap];1.00[EUR][1000 genomes]
rs7205990	1.00[MEX][hapmap];0.81[AMR][1000 genomes]
rs7206347	1.00[EUR][1000 genomes]
rs74024182	1.00[EUR][1000 genomes]
rs74024183	1.00[EUR][1000 genomes]
rs74024184	1.00[EUR][1000 genomes]
rs74024185	1.00[EUR][1000 genomes]
rs74024186	1.00[EUR][1000 genomes]
rs74024188	1.00[EUR][1000 genomes]
rs74024199	0.81[AMR][1000 genomes]
rs74024200	0.81[AMR][1000 genomes]
rs74026022	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74026033	1.00[EUR][1000 genomes]
rs74026049	1.00[EUR][1000 genomes]
rs8045571	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs8046253	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8046280	0.81[AMR][1000 genomes]
rs8046662	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs8046786	0.96[YRI][hapmap];1.00[EUR][1000 genomes]
rs8049046	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8049316	1.00[MEX][hapmap]
rs8050252	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8051869	0.81[AMR][1000 genomes]
rs8053040	0.81[AMR][1000 genomes]
rs8053657	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8053883	1.00[MEX][hapmap]
rs8054203	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8055338	1.00[MEX][hapmap]
rs8062602	1.00[EUR][1000 genomes]
rs8064090	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482577	chr16:70329048-70516069	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
2	esv3390669	chr16:70363244-70400179	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv833272	chr16:70369769-70569723	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70381400-70394400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr16:70381600-70392600	Weak transcription	Fetal Kidney	kidney
3	chr16:70381600-70413200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr16:70381600-70414000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr16:70382200-70392800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr16:70382200-70413600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr16:70382600-70413000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr16:70382800-70403600	Strong transcription	Primary T helper cells PMA-I stimulated	--
9	chr16:70382800-70409800	Strong transcription	Fetal Muscle Leg	muscle
10	chr16:70382800-70410800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr16:70382800-70410800	Strong transcription	HUES64 Cell Line	embryonic stem cell
12	chr16:70383000-70403600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr16:70383000-70410200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
14	chr16:70383000-70410600	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr16:70383000-70410800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr16:70383000-70413000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr16:70383000-70413000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr16:70383000-70413000	Strong transcription	Fetal Thymus	thymus
19	chr16:70383200-70412200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr16:70383200-70413000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr16:70383200-70413400	Strong transcription	Fetal Stomach	stomach
22	chr16:70383400-70410600	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr16:70383400-70411000	Strong transcription	Primary B cells from peripheral blood	blood
24	chr16:70383400-70411000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr16:70383600-70392000	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr16:70383600-70392600	Weak transcription	Hela-S3	cervix
27	chr16:70383600-70392800	Weak transcription	Fetal Heart	heart
28	chr16:70383600-70407600	Strong transcription	HepG2	liver
29	chr16:70383600-70412200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr16:70383600-70413200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr16:70383600-70413400	Strong transcription	Fetal Muscle Trunk	muscle
32	chr16:70383600-70413600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr16:70383800-70401000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr16:70383800-70410600	Strong transcription	Liver	Liver
35	chr16:70384200-70403600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr16:70384400-70411000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr16:70384400-70411400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr16:70384600-70413400	Strong transcription	Fetal Intestine Small	intestine
39	chr16:70385000-70397000	Strong transcription	Cortex derived primary cultured neurospheres	brain
40	chr16:70385200-70403600	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr16:70385200-70407600	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr16:70385200-70410800	Strong transcription	Duodenum Mucosa	Duodenum
43	chr16:70385200-70410800	Strong transcription	Stomach Smooth Muscle	stomach
44	chr16:70385400-70410200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr16:70385600-70403600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr16:70385600-70407800	Strong transcription	Brain Anterior Caudate	brain
47	chr16:70385600-70410400	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr16:70385800-70401200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr16:70385800-70410200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
50	chr16:70386000-70413400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links