Variant report

Variant	rs35904382
Chromosome Location	chr16:70370551-70370552
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:70365572..70369615-chr16:70370399..70374531,4	K562	blood:
2	chr16:70368628..70371487-chr16:70373484..70375931,2	MCF-7	breast:
3	chr16:70369367..70371961-chr16:70371980..70374607,2	MCF-7	breast:

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:119)

rs_ID	r²[population]
rs11859191	1.00[EUR][1000 genomes]
rs11859870	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11860870	1.00[MEX][hapmap]
rs11861486	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11862053	1.00[MEX][hapmap]
rs11862150	1.00[EUR][1000 genomes]
rs11862188	1.00[EUR][1000 genomes]
rs11863128	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11863943	1.00[MEX][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11864179	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11864326	0.84[AMR][1000 genomes]
rs11865484	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11865564	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16970121	1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16970133	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16970141	1.00[MEX][hapmap]
rs16970147	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs16970149	0.92[AMR][1000 genomes]
rs16970151	1.00[MEX][hapmap];0.92[AMR][1000 genomes]
rs16970152	1.00[MEX][hapmap];0.92[AMR][1000 genomes]
rs16970153	0.92[AMR][1000 genomes]
rs16970159	1.00[MEX][hapmap];0.84[AMR][1000 genomes]
rs16970165	1.00[MEX][hapmap];0.92[AMR][1000 genomes]
rs16970169	1.00[MEX][hapmap];0.84[AMR][1000 genomes]
rs16970302	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16970361	1.00[MEX][hapmap]
rs17878609	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17878832	1.00[EUR][1000 genomes]
rs17879665	0.92[AMR][1000 genomes]
rs17880242	1.00[EUR][1000 genomes]
rs17880268	1.00[MEX][hapmap];0.84[AMR][1000 genomes]
rs17881069	1.00[EUR][1000 genomes]
rs17881219	1.00[MEX][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17882471	1.00[MEX][hapmap]
rs17883309	1.00[EUR][1000 genomes]
rs17886064	1.00[EUR][1000 genomes]
rs3096368	1.00[EUR][1000 genomes]
rs4999488	0.84[AMR][1000 genomes]
rs55657328	1.00[EUR][1000 genomes]
rs55769835	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55775924	0.92[AMR][1000 genomes]
rs55805938	1.00[EUR][1000 genomes]
rs55819743	1.00[EUR][1000 genomes]
rs55916527	0.92[AMR][1000 genomes]
rs55936739	1.00[EUR][1000 genomes]
rs56050266	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56082018	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56348821	0.92[AMR][1000 genomes]
rs56836664	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56980444	1.00[EUR][1000 genomes]
rs57150196	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs57422630	1.00[EUR][1000 genomes]
rs57492770	0.93[AFR][1000 genomes]
rs58047061	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58131227	1.00[EUR][1000 genomes]
rs58328210	1.00[EUR][1000 genomes]
rs58434182	0.92[AFR][1000 genomes]
rs58467558	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59260159	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs59384897	1.00[EUR][1000 genomes]
rs59552467	0.92[AMR][1000 genomes]
rs59612351	1.00[EUR][1000 genomes]
rs60011151	0.92[AMR][1000 genomes]
rs60045805	0.85[AMR][1000 genomes]
rs60387488	0.92[AMR][1000 genomes]
rs60426209	1.00[EUR][1000 genomes]
rs60646112	0.92[AMR][1000 genomes]
rs60815141	1.00[EUR][1000 genomes]
rs61284127	0.92[AMR][1000 genomes]
rs61319691	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61369696	0.92[AMR][1000 genomes]
rs6499312	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6499313	1.00[EUR][1000 genomes]
rs6499314	1.00[MEX][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6499315	1.00[EUR][1000 genomes]
rs7188864	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7189535	1.00[MEX][hapmap]
rs7190536	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7190921	1.00[EUR][1000 genomes]
rs7192000	1.00[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7195086	1.00[MEX][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7195104	0.92[AMR][1000 genomes]
rs7195567	1.00[MEX][hapmap]
rs7196392	1.00[MEX][hapmap]
rs7198871	0.93[ASW][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.96[YRI][hapmap];1.00[EUR][1000 genomes]
rs7199145	1.00[MEX][hapmap]
rs7199346	1.00[MEX][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7199655	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7203548	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7203761	1.00[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7203772	0.93[ASW][hapmap];1.00[MEX][hapmap];0.87[YRI][hapmap]
rs7205918	0.86[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7205990	1.00[MEX][hapmap]
rs7206347	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024182	1.00[EUR][1000 genomes]
rs74024183	1.00[EUR][1000 genomes]
rs74024184	1.00[EUR][1000 genomes]
rs74024185	1.00[EUR][1000 genomes]
rs74024186	1.00[EUR][1000 genomes]
rs74024188	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74026022	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74026026	0.92[AMR][1000 genomes]
rs74026033	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74026049	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8045571	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs8046253	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8046662	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs8046786	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8049046	1.00[EUR][1000 genomes]
rs8049316	1.00[MEX][hapmap]
rs8050252	0.84[AMR][1000 genomes]
rs8053657	1.00[EUR][1000 genomes]
rs8053883	1.00[MEX][hapmap];0.85[AMR][1000 genomes]
rs8054203	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8055338	1.00[MEX][hapmap]
rs8056811	0.93[ASW][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8058735	0.92[AMR][1000 genomes]
rs8062602	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8064090	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906871	chr16:70302333-70375873	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv482577	chr16:70329048-70516069	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
3	esv3390669	chr16:70363244-70400179	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
4	nsv833272	chr16:70369769-70569723	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70334200-70379800	Weak transcription	Stomach Mucosa	stomach
2	chr16:70335800-70374200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr16:70346200-70376000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr16:70347400-70371000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr16:70348200-70371000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr16:70348400-70371000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr16:70348800-70370600	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr16:70348800-70371000	Strong transcription	Liver	Liver
9	chr16:70349400-70370600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr16:70349400-70371200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr16:70349400-70372000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr16:70349600-70379800	Weak transcription	Fetal Brain Male	brain
13	chr16:70349800-70372600	Strong transcription	Fetal Muscle Trunk	muscle
14	chr16:70349800-70373200	Strong transcription	Fetal Stomach	stomach
15	chr16:70349800-70374600	Strong transcription	Fetal Muscle Leg	muscle
16	chr16:70352800-70373000	Strong transcription	Cortex derived primary cultured neurospheres	brain
17	chr16:70356600-70370600	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr16:70357200-70380200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr16:70359000-70370800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr16:70360000-70371000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr16:70360000-70373000	Strong transcription	Fetal Intestine Small	intestine
22	chr16:70362800-70370600	Strong transcription	Spleen	Spleen
23	chr16:70363200-70370600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr16:70363200-70370600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr16:70363200-70370600	Strong transcription	Brain Germinal Matrix	brain
26	chr16:70363200-70371000	Strong transcription	HUES64 Cell Line	embryonic stem cell
27	chr16:70363200-70371200	Strong transcription	Fetal Thymus	thymus
28	chr16:70363200-70372400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr16:70363200-70374400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr16:70363400-70370800	Strong transcription	Placenta Amnion	Placenta Amnion
31	chr16:70363400-70371000	Strong transcription	Thymus	Thymus
32	chr16:70363600-70370600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr16:70363600-70371000	Strong transcription	Stomach Smooth Muscle	stomach
34	chr16:70365000-70371000	Strong transcription	Osteobl	bone
35	chr16:70365600-70370600	Strong transcription	H1 Cell Line	embryonic stem cell
36	chr16:70365600-70371000	Strong transcription	Duodenum Smooth Muscle	Duodenum
37	chr16:70366000-70370800	Strong transcription	Brain Hippocampus Middle	brain
38	chr16:70366000-70371000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr16:70366800-70370800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr16:70367000-70376000	Weak transcription	K562	blood
41	chr16:70367400-70371000	Strong transcription	Brain Cingulate Gyrus	brain
42	chr16:70367600-70370600	Strong transcription	HSMM	muscle
43	chr16:70368200-70380200	Weak transcription	Small Intestine	intestine
44	chr16:70368400-70379600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr16:70368400-70379800	Weak transcription	Hela-S3	cervix
46	chr16:70368800-70379800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr16:70368800-70379800	Weak transcription	Primary hematopoietic stem cells	blood
48	chr16:70368800-70379800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr16:70369000-70373400	Weak transcription	HUVEC	blood vessel
50	chr16:70369000-70374000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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