Variant report

Variant	rs59260159
Chromosome Location	chr16:70374522-70374523
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:70365572..70369615-chr16:70370399..70374531,4	K562	blood:
2	chr16:70374148..70377902-chr16:70377991..70380820,4	K562	blood:
3	chr16:70359039..70361319-chr16:70373919..70375711,2	MCF-7	breast:
4	chr16:70368628..70371487-chr16:70373484..70375931,2	MCF-7	breast:
5	chr16:70373940..70375897-chr16:70406795..70408435,2	MCF-7	breast:
6	chr16:70374149..70377957-chr16:70378674..70382168,7	MCF-7	breast:
7	chr16:70367181..70369957-chr16:70373031..70374921,2	K562	blood:
8	chr16:70373606..70376066-chr16:70379269..70380802,3	K562	blood:
9	chr16:70369367..70371961-chr16:70371980..70374607,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000168872	Chromatin interaction
ENSG00000261777	Chromatin interaction

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs11859870	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11861097	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11861486	0.84[AMR][1000 genomes]
rs11863128	0.86[AFR][1000 genomes]
rs16970121	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs16970133	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16970141	0.91[AMR][1000 genomes]
rs16970147	0.81[AMR][1000 genomes]
rs16970149	1.00[EUR][1000 genomes]
rs16970151	1.00[EUR][1000 genomes]
rs16970152	1.00[EUR][1000 genomes]
rs16970153	1.00[EUR][1000 genomes]
rs16970159	1.00[EUR][1000 genomes]
rs16970165	1.00[EUR][1000 genomes]
rs17886064	0.81[AMR][1000 genomes]
rs35904382	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs55963712	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56043981	0.81[AMR][1000 genomes]
rs56050266	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs56096542	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56348821	1.00[EUR][1000 genomes]
rs56836664	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs57150196	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57422630	0.81[AMR][1000 genomes]
rs57492770	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58047061	0.84[AMR][1000 genomes]
rs58055772	0.81[AMR][1000 genomes]
rs58328210	0.81[AMR][1000 genomes]
rs58434182	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59116576	1.00[EUR][1000 genomes]
rs59552467	1.00[EUR][1000 genomes]
rs59791510	0.81[AMR][1000 genomes]
rs59928915	0.91[AMR][1000 genomes]
rs60011151	1.00[EUR][1000 genomes]
rs60387488	1.00[EUR][1000 genomes]
rs60523557	0.81[AMR][1000 genomes]
rs61266247	0.91[AMR][1000 genomes]
rs61284127	1.00[EUR][1000 genomes]
rs61369696	1.00[EUR][1000 genomes]
rs61391917	1.00[EUR][1000 genomes]
rs6499306	1.00[EUR][1000 genomes]
rs6499307	1.00[EUR][1000 genomes]
rs6499312	0.84[AMR][1000 genomes]
rs7184248	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7184643	1.00[EUR][1000 genomes]
rs7184759	1.00[EUR][1000 genomes]
rs7188864	0.84[AMR][1000 genomes]
rs7189535	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7195104	1.00[EUR][1000 genomes]
rs7198871	0.87[AFR][1000 genomes]
rs7198923	1.00[EUR][1000 genomes]
rs7199043	1.00[EUR][1000 genomes]
rs7199655	0.84[AMR][1000 genomes]
rs7203548	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7203761	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7203772	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7205871	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7205990	0.81[AMR][1000 genomes]
rs74024183	0.86[AFR][1000 genomes]
rs74024188	0.81[AFR][1000 genomes]
rs74024196	1.00[EUR][1000 genomes]
rs74024199	0.81[AMR][1000 genomes]
rs74024200	0.81[AMR][1000 genomes]
rs74026022	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74026026	1.00[EUR][1000 genomes]
rs8044699	1.00[EUR][1000 genomes]
rs8045769	1.00[EUR][1000 genomes]
rs8046253	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8046280	0.81[AMR][1000 genomes]
rs8046786	0.81[AFR][1000 genomes]
rs8049046	0.81[AMR][1000 genomes]
rs8049361	1.00[EUR][1000 genomes]
rs8050252	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8051869	0.81[AMR][1000 genomes]
rs8053040	0.81[AMR][1000 genomes]
rs8053657	0.91[AMR][1000 genomes]
rs8053883	1.00[EUR][1000 genomes]
rs8054203	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs8056811	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8058032	1.00[EUR][1000 genomes]
rs9673623	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906871	chr16:70302333-70375873	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv482577	chr16:70329048-70516069	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
3	esv3390669	chr16:70363244-70400179	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
4	nsv833272	chr16:70369769-70569723	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70334200-70379800	Weak transcription	Stomach Mucosa	stomach
2	chr16:70346200-70376000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr16:70349600-70379800	Weak transcription	Fetal Brain Male	brain
4	chr16:70349800-70374600	Strong transcription	Fetal Muscle Leg	muscle
5	chr16:70357200-70380200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr16:70367000-70376000	Weak transcription	K562	blood
7	chr16:70368200-70380200	Weak transcription	Small Intestine	intestine
8	chr16:70368400-70379600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr16:70368400-70379800	Weak transcription	Hela-S3	cervix
10	chr16:70368800-70379800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr16:70368800-70379800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr16:70368800-70379800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr16:70369000-70375600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr16:70369000-70375600	Weak transcription	Fetal Heart	heart
15	chr16:70369000-70376000	Weak transcription	Psoas Muscle	Psoas
16	chr16:70369000-70379400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr16:70369000-70379600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr16:70369000-70379600	Weak transcription	A549	lung
19	chr16:70369000-70379800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr16:70369000-70379800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr16:70369000-70379800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr16:70369000-70379800	Weak transcription	Aorta	Aorta
23	chr16:70369000-70379800	Weak transcription	Colon Smooth Muscle	Colon
24	chr16:70369000-70379800	Weak transcription	Esophagus	oesophagus
25	chr16:70369000-70379800	Weak transcription	Fetal Kidney	kidney
26	chr16:70369000-70379800	Weak transcription	Fetal Lung	lung
27	chr16:70369000-70379800	Weak transcription	Gastric	stomach
28	chr16:70369000-70379800	Weak transcription	Rectal Smooth Muscle	rectum
29	chr16:70369000-70379800	Weak transcription	HSMMtube	muscle
30	chr16:70369000-70379800	Weak transcription	NH-A	brain
31	chr16:70369000-70379800	Weak transcription	NHDF-Ad	bronchial
32	chr16:70369200-70379000	Weak transcription	HepG2	liver
33	chr16:70369200-70379200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr16:70369200-70379600	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr16:70369200-70379600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr16:70369200-70379600	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr16:70369200-70379600	Weak transcription	GM12878-XiMat	blood
38	chr16:70369200-70379600	Weak transcription	HMEC	breast
39	chr16:70369200-70379800	Weak transcription	Primary T cells from cord blood	blood
40	chr16:70369200-70379800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr16:70369200-70379800	Weak transcription	Brain Substantia Nigra	brain
42	chr16:70369400-70375600	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr16:70369400-70375600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr16:70369400-70375800	Weak transcription	Left Ventricle	heart
45	chr16:70369400-70375800	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr16:70369400-70379200	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr16:70369400-70379200	Weak transcription	Pancreas	Pancrea
48	chr16:70369400-70379600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr16:70369400-70379600	Weak transcription	Primary B cells from cord blood	blood
50	chr16:70369400-70379600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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