Variant report

Variant	rs7189535
Chromosome Location	chr16:70329025-70329026
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:70319780..70324322-chr16:70325066..70330067,6	MCF-7	breast:
2	chr16:70321807..70326700-chr16:70327142..70336316,14	MCF-7	breast:
3	chr16:70326812..70331019-chr16:70331790..70334670,4	MCF-7	breast:
4	chr16:70326803..70329805-chr16:70331309..70336594,5	K562	blood:
5	chr16:70321558..70325394-chr16:70325539..70331219,12	K562	blood:

Variant related genes	Relation type
ENSG00000260537	Chromatin interaction
ENSG00000157349	Chromatin interaction
ENSG00000090861	Chromatin interaction

Extended variants
information (count: 134 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:129)

rs_ID	r²[population]
rs11537667	0.81[AMR][1000 genomes]
rs11859191	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11859257	0.81[AMR][1000 genomes]
rs11859730	0.91[AMR][1000 genomes]
rs11859827	0.81[AMR][1000 genomes]
rs11859870	1.00[EUR][1000 genomes]
rs11860870	1.00[MEX][hapmap]
rs11860922	0.81[AMR][1000 genomes]
rs11861097	0.92[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11861651	0.84[AMR][1000 genomes]
rs11862053	1.00[MEX][hapmap];0.81[AMR][1000 genomes]
rs11862150	0.81[AMR][1000 genomes]
rs11862188	0.81[AMR][1000 genomes]
rs11863943	1.00[MEX][hapmap]
rs11866378	0.81[AMR][1000 genomes]
rs11866451	0.81[AMR][1000 genomes]
rs16970121	1.00[MEX][hapmap]
rs16970133	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs16970141	1.00[MEX][hapmap]
rs16970147	1.00[MEX][hapmap]
rs16970149	1.00[EUR][1000 genomes]
rs16970151	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs16970152	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs16970153	1.00[EUR][1000 genomes]
rs16970159	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs16970165	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs16970169	1.00[MEX][hapmap]
rs16970302	1.00[MEX][hapmap];0.84[AMR][1000 genomes]
rs16970361	1.00[MEX][hapmap];0.81[AMR][1000 genomes]
rs17880268	1.00[MEX][hapmap]
rs17881219	1.00[MEX][hapmap]
rs17882471	1.00[MEX][hapmap]
rs28438754	0.84[AMR][1000 genomes]
rs2869156	0.81[AMR][1000 genomes]
rs3972075	0.91[AMR][1000 genomes]
rs3972077	0.84[AMR][1000 genomes]
rs55657328	0.81[AMR][1000 genomes]
rs55805938	0.81[AMR][1000 genomes]
rs55819743	0.81[AMR][1000 genomes]
rs55963712	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55965002	0.81[AMR][1000 genomes]
rs55971559	0.81[AMR][1000 genomes]
rs56051513	0.91[AMR][1000 genomes]
rs56077083	0.84[AMR][1000 genomes]
rs56090000	0.81[AMR][1000 genomes]
rs56096542	1.00[EUR][1000 genomes]
rs56348821	1.00[EUR][1000 genomes]
rs57150196	1.00[EUR][1000 genomes]
rs57320283	0.81[AMR][1000 genomes]
rs57492770	1.00[EUR][1000 genomes]
rs57623576	0.81[AMR][1000 genomes]
rs58131227	0.81[AMR][1000 genomes]
rs58319566	0.91[AMR][1000 genomes]
rs58434182	1.00[EUR][1000 genomes]
rs58467558	0.84[AMR][1000 genomes]
rs59116576	1.00[EUR][1000 genomes]
rs59260159	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59272950	0.84[AMR][1000 genomes]
rs59384897	0.81[AMR][1000 genomes]
rs59552467	1.00[EUR][1000 genomes]
rs59612351	0.81[AMR][1000 genomes]
rs59769732	0.81[AMR][1000 genomes]
rs59849898	0.81[AMR][1000 genomes]
rs60011151	1.00[EUR][1000 genomes]
rs60103946	0.81[AMR][1000 genomes]
rs60387488	1.00[EUR][1000 genomes]
rs60426209	0.81[AMR][1000 genomes]
rs60463946	0.81[AMR][1000 genomes]
rs60841206	0.81[AMR][1000 genomes]
rs61172065	0.81[AMR][1000 genomes]
rs61284127	1.00[EUR][1000 genomes]
rs61369696	1.00[EUR][1000 genomes]
rs61391917	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61594809	0.81[AMR][1000 genomes]
rs6499306	1.00[EUR][1000 genomes]
rs6499307	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6499314	1.00[MEX][hapmap]
rs7184248	1.00[EUR][1000 genomes]
rs7184643	1.00[EUR][1000 genomes]
rs7184759	1.00[EUR][1000 genomes]
rs7185665	0.81[AMR][1000 genomes]
rs7186024	0.81[AMR][1000 genomes]
rs7190921	0.81[AMR][1000 genomes]
rs7191210	0.91[AMR][1000 genomes]
rs7192000	1.00[MEX][hapmap];0.84[AMR][1000 genomes]
rs7195086	1.00[MEX][hapmap]
rs7195104	1.00[EUR][1000 genomes]
rs7195567	1.00[MEX][hapmap]
rs7196392	1.00[MEX][hapmap]
rs7198871	0.86[ASW][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7198923	1.00[EUR][1000 genomes]
rs7199145	1.00[MEX][hapmap]
rs7199346	1.00[MEX][hapmap]
rs7203548	1.00[EUR][1000 genomes]
rs7203761	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs7203772	0.86[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap]
rs7205871	1.00[EUR][1000 genomes]
rs7205918	1.00[MEX][hapmap];0.84[AMR][1000 genomes]
rs7205990	1.00[MEX][hapmap]
rs74024172	0.91[AMR][1000 genomes]
rs74024176	0.81[AMR][1000 genomes]
rs74024177	0.81[AMR][1000 genomes]
rs74024180	0.81[AMR][1000 genomes]
rs74024182	0.81[AMR][1000 genomes]
rs74024183	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74024184	0.81[AMR][1000 genomes]
rs74024185	0.81[AMR][1000 genomes]
rs74024186	0.81[AMR][1000 genomes]
rs74024187	0.81[AMR][1000 genomes]
rs74024188	0.84[AMR][1000 genomes]
rs74024191	0.81[AMR][1000 genomes]
rs74024193	0.81[AMR][1000 genomes]
rs74024196	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74026026	1.00[EUR][1000 genomes]
rs8044699	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8045571	1.00[MEX][hapmap];0.81[AMR][1000 genomes]
rs8045769	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8046662	1.00[MEX][hapmap];0.81[AMR][1000 genomes]
rs8046786	0.84[AMR][1000 genomes]
rs8049316	1.00[MEX][hapmap]
rs8049361	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8050252	1.00[EUR][1000 genomes]
rs8053883	1.00[EUR][1000 genomes]
rs8055675	1.00[AMR][1000 genomes]
rs8056048	0.84[AMR][1000 genomes]
rs8056196	1.00[AMR][1000 genomes]
rs8056811	0.86[ASW][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap]
rs8063749	0.81[AMR][1000 genomes]
rs9673623	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833271	chr16:70185694-70353334	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv1061286	chr16:70253809-70331407	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv906871	chr16:70302333-70375873	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv906872	chr16:70303418-70356746	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv960356	chr16:70318585-70339325	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70324000-70332400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr16:70324000-70332600	Weak transcription	NHEK	skin
3	chr16:70324000-70332800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr16:70324200-70332400	Weak transcription	Colonic Mucosa	Colon
5	chr16:70324200-70332400	Weak transcription	Fetal Muscle Leg	muscle
6	chr16:70324200-70332600	Weak transcription	Placenta	Placenta
7	chr16:70324400-70332400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr16:70325400-70332400	Weak transcription	HUVEC	blood vessel
9	chr16:70328800-70332200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr16:70328800-70332400	Weak transcription	Hela-S3	cervix
11	chr16:70329000-70330800	Enhancers	HepG2	liver
12	chr16:70329000-70332400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr16:70329000-70332800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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