Variant report

Variant	rs58328210
Chromosome Location	chr16:70387759-70387760
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:70386496..70388574-chr16:70391241..70393412,2	MCF-7	breast:
2	chr16:70377532..70382370-chr16:70384926..70388445,4	MCF-7	breast:
3	chr16:70386987..70389423-chr16:70409457..70411415,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168872	Chromatin interaction
ENSG00000261777	Chromatin interaction

Extended variants
information (count: 125 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs11537667	0.82[AFR][1000 genomes]
rs11859191	1.00[EUR][1000 genomes]
rs11859827	0.88[AFR][1000 genomes]
rs11860870	0.91[AFR][1000 genomes]
rs11862053	0.84[AFR][1000 genomes]
rs11862150	1.00[EUR][1000 genomes]
rs11862188	1.00[EUR][1000 genomes]
rs11863943	1.00[EUR][1000 genomes]
rs11864179	1.00[EUR][1000 genomes]
rs11864326	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11865484	1.00[EUR][1000 genomes]
rs11865564	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11866378	0.86[AFR][1000 genomes]
rs16970121	1.00[EUR][1000 genomes]
rs16970141	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs16970147	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16970159	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs16970169	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs16970302	1.00[EUR][1000 genomes]
rs16970361	0.84[AFR][1000 genomes]
rs16970609	0.90[AFR][1000 genomes]
rs17878609	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17878832	1.00[EUR][1000 genomes]
rs17880242	1.00[EUR][1000 genomes]
rs17880268	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs17881069	1.00[EUR][1000 genomes]
rs17881219	1.00[EUR][1000 genomes]
rs17883309	1.00[EUR][1000 genomes]
rs17886064	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3096368	1.00[EUR][1000 genomes]
rs35904382	1.00[EUR][1000 genomes]
rs4999488	0.81[AMR][1000 genomes]
rs55657328	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55769835	1.00[EUR][1000 genomes]
rs55805938	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55819743	1.00[EUR][1000 genomes]
rs55936739	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56043981	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56050266	1.00[EUR][1000 genomes]
rs56082018	1.00[EUR][1000 genomes]
rs56090000	0.88[AFR][1000 genomes]
rs56096542	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56217164	0.90[AFR][1000 genomes]
rs56234537	0.90[AFR][1000 genomes]
rs56980444	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57150196	0.81[AMR][1000 genomes]
rs57279408	0.90[AFR][1000 genomes]
rs57422630	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57623576	0.90[AFR][1000 genomes]
rs58047061	1.00[EUR][1000 genomes]
rs58055772	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58131227	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58467558	1.00[EUR][1000 genomes]
rs59260159	0.81[AMR][1000 genomes]
rs59384897	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59612351	1.00[EUR][1000 genomes]
rs59791510	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59849898	0.82[AFR][1000 genomes]
rs59928915	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs60103946	0.82[AFR][1000 genomes]
rs60426209	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60523557	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60815141	1.00[EUR][1000 genomes]
rs61172065	0.87[AFR][1000 genomes]
rs61266247	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs61319691	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61391917	0.90[AFR][1000 genomes]
rs61594809	0.86[AFR][1000 genomes]
rs6499309	0.82[AFR][1000 genomes]
rs6499312	1.00[EUR][1000 genomes]
rs6499313	1.00[EUR][1000 genomes]
rs6499314	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6499315	1.00[EUR][1000 genomes]
rs7184248	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7185665	0.86[AFR][1000 genomes]
rs7186024	0.86[AFR][1000 genomes]
rs7188864	1.00[EUR][1000 genomes]
rs7190536	1.00[EUR][1000 genomes]
rs7190921	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7192000	1.00[EUR][1000 genomes]
rs7195086	1.00[EUR][1000 genomes]
rs7195567	0.90[AFR][1000 genomes]
rs7198871	1.00[EUR][1000 genomes]
rs7199346	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7199655	1.00[EUR][1000 genomes]
rs7203772	0.90[AMR][1000 genomes]
rs7204800	0.88[AFR][1000 genomes]
rs7205871	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7205918	1.00[EUR][1000 genomes]
rs7205990	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7206347	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74024180	0.84[AFR][1000 genomes]
rs74024182	1.00[EUR][1000 genomes]
rs74024183	1.00[EUR][1000 genomes]
rs74024184	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74024185	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74024186	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74024187	0.86[AFR][1000 genomes]
rs74024188	1.00[EUR][1000 genomes]
rs74024191	0.86[AFR][1000 genomes]
rs74024193	0.89[AFR][1000 genomes]
rs74024196	0.90[AFR][1000 genomes]
rs74024199	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74024200	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74026022	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74026033	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74026049	1.00[EUR][1000 genomes]
rs8045571	1.00[EUR][1000 genomes]
rs8046253	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8046280	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8046662	1.00[EUR][1000 genomes]
rs8046786	1.00[EUR][1000 genomes]
rs8049046	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8050252	0.81[AMR][1000 genomes]
rs8051869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8053040	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8053657	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8054203	1.00[EUR][1000 genomes]
rs8056811	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8062602	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8063749	0.86[AFR][1000 genomes]
rs8064090	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482577	chr16:70329048-70516069	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
2	esv3390669	chr16:70363244-70400179	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	nsv833272	chr16:70369769-70569723	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70381200-70388800	Weak transcription	Spleen	Spleen
2	chr16:70381200-70389200	Weak transcription	Gastric	stomach
3	chr16:70381400-70389000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr16:70381400-70394400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr16:70381600-70388600	Weak transcription	Aorta	Aorta
6	chr16:70381600-70388600	Weak transcription	Brain Substantia Nigra	brain
7	chr16:70381600-70389000	Weak transcription	Ovary	ovary
8	chr16:70381600-70389200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr16:70381600-70392600	Weak transcription	Fetal Kidney	kidney
10	chr16:70381600-70413200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr16:70381600-70414000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr16:70381800-70389000	Weak transcription	HSMMtube	muscle
13	chr16:70382000-70387800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr16:70382000-70388600	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr16:70382000-70388800	Weak transcription	Colonic Mucosa	Colon
16	chr16:70382200-70388400	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr16:70382200-70388600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr16:70382200-70388600	Weak transcription	NH-A	brain
19	chr16:70382200-70389000	Weak transcription	Fetal Brain Male	brain
20	chr16:70382200-70389000	Weak transcription	GM12878-XiMat	blood
21	chr16:70382200-70389000	Weak transcription	HUVEC	blood vessel
22	chr16:70382200-70389200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr16:70382200-70389200	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr16:70382200-70389400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr16:70382200-70390200	Weak transcription	Stomach Mucosa	stomach
26	chr16:70382200-70392800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr16:70382200-70413600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr16:70382400-70388600	Weak transcription	Small Intestine	intestine
29	chr16:70382400-70389200	Weak transcription	Brain Cingulate Gyrus	brain
30	chr16:70382400-70389400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr16:70382400-70389400	Weak transcription	HMEC	breast
32	chr16:70382400-70389600	Weak transcription	Right Ventricle	heart
33	chr16:70382600-70413000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr16:70382800-70403600	Strong transcription	Primary T helper cells PMA-I stimulated	--
35	chr16:70382800-70409800	Strong transcription	Fetal Muscle Leg	muscle
36	chr16:70382800-70410800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr16:70382800-70410800	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr16:70383000-70388600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr16:70383000-70403600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr16:70383000-70410200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr16:70383000-70410600	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr16:70383000-70410800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr16:70383000-70413000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr16:70383000-70413000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr16:70383000-70413000	Strong transcription	Fetal Thymus	thymus
46	chr16:70383200-70412200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr16:70383200-70413000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr16:70383200-70413400	Strong transcription	Fetal Stomach	stomach
49	chr16:70383400-70388600	Weak transcription	Pancreas	Pancrea
50	chr16:70383400-70390600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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