Variant report

Variant	rs16970392
Chromosome Location	chr15:33670632-33670633
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11072421	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11633044	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11855635	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1317242	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16970283	0.81[CHB][hapmap];0.87[JPT][hapmap];0.90[ASN][1000 genomes]
rs1814871	0.94[ASN][1000 genomes]
rs2245042	0.94[ASN][1000 genomes]
rs2248088	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2339268	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2339269	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2596198	0.91[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs2596199	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2596200	1.00[CEU][hapmap];0.95[CHB][hapmap];0.96[JPT][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2596201	0.95[ASN][1000 genomes]
rs2596203	0.80[ASN][1000 genomes]
rs2596204	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2596205	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2596206	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2596207	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2596208	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2596209	0.81[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs2676051	0.95[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs2676052	0.95[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs2676053	0.95[ASN][1000 genomes]
rs2676054	0.95[ASN][1000 genomes]
rs2676055	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2676056	0.96[ASN][1000 genomes]
rs2676057	0.96[ASN][1000 genomes]
rs2676058	0.96[ASN][1000 genomes]
rs28432943	0.91[ASN][1000 genomes]
rs4304993	0.80[CHB][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs4421944	0.88[ASN][1000 genomes]
rs4619367	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533346	chr15:33469439-33809641	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv832963	chr15:33514798-33712442	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv832964	chr15:33608771-33784018	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv568919	chr15:33638335-33736683	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33644600-33701600	Weak transcription	Aorta	Aorta
2	chr15:33670200-33671400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr15:33670200-33672000	Weak transcription	Fetal Muscle Leg	muscle
4	chr15:33670600-33671200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr15:33670600-33671400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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