Variant report

Variant	rs4304993
Chromosome Location	chr15:33667669-33667670
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11072421	0.86[CHB][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs11633044	0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs11855635	0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs1317242	0.86[CHB][hapmap];0.95[CHD][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs16970283	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16970392	0.80[CHB][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs1814871	0.84[ASN][1000 genomes]
rs2245042	0.85[ASN][1000 genomes]
rs2248088	0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs2339268	0.97[CHD][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs2339269	0.80[JPT][hapmap];0.86[ASN][1000 genomes]
rs2596198	0.83[CHD][hapmap]
rs2596199	0.80[JPT][hapmap];0.85[ASN][1000 genomes]
rs2596200	0.88[ASN][1000 genomes]
rs2596201	0.85[ASN][1000 genomes]
rs2596204	0.80[JPT][hapmap];0.86[ASN][1000 genomes]
rs2596205	0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs2596206	0.80[JPT][hapmap];0.86[ASN][1000 genomes]
rs2596207	0.80[JPT][hapmap];0.86[ASN][1000 genomes]
rs2596208	0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs2596209	0.91[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs2676052	0.88[CHD][hapmap]
rs2676053	0.85[ASN][1000 genomes]
rs2676054	0.85[ASN][1000 genomes]
rs2676055	0.92[CHD][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs2676056	0.86[ASN][1000 genomes]
rs2676057	0.86[ASN][1000 genomes]
rs2676058	0.86[ASN][1000 genomes]
rs28432943	0.99[ASN][1000 genomes]
rs4421944	0.98[ASN][1000 genomes]
rs4619367	0.92[CHD][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533346	chr15:33469439-33809641	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv832963	chr15:33514798-33712442	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv832964	chr15:33608771-33784018	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv568919	chr15:33638335-33736683	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4304993	C15orf55	cis	cerebellum	SCAN
rs4304993	ARHGAP11B	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33644600-33701600	Weak transcription	Aorta	Aorta
2	chr15:33666200-33667800	Enhancers	Fetal Stomach	stomach
3	chr15:33666400-33667800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr15:33666800-33669400	Weak transcription	Fetal Muscle Leg	muscle
5	chr15:33667400-33667800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr15:33667400-33668000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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