Variant report

Variant	rs16970857
Chromosome Location	chr16:71317567-71317568
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:71313544..71318343-chr16:71321289..71325664,12	K562	blood:
2	chr16:71315560..71317453-chr16:71317463..71319154,3	MCF-7	breast:
3	chr16:71310986..71313329-chr16:71316172..71318464,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000180917	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10500556	1.00[AMR][1000 genomes]
rs11859416	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11861972	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11863110	1.00[MKK][hapmap];0.91[YRI][hapmap]
rs16973164	1.00[AMR][1000 genomes]
rs2004142	1.00[AMR][1000 genomes]
rs2040652	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2158104	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56996503	1.00[AMR][1000 genomes]
rs59737920	1.00[AMR][1000 genomes]
rs60009511	1.00[AMR][1000 genomes]
rs61559998	1.00[AMR][1000 genomes]
rs7202726	1.00[AMR][1000 genomes]
rs8051376	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8054498	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv482374	chr16:71228600-71401617	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1062426	chr16:71307180-71423400	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71301000-71318400	Weak transcription	Pancreas	Pancrea
2	chr16:71306600-71322600	Weak transcription	Small Intestine	intestine
3	chr16:71307800-71318600	Weak transcription	Psoas Muscle	Psoas
4	chr16:71310400-71318800	Weak transcription	Thymus	Thymus
5	chr16:71311000-71317600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr16:71315200-71317800	Weak transcription	NHDF-Ad	bronchial
7	chr16:71315400-71317600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr16:71315400-71317600	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr16:71315400-71317600	Weak transcription	Ovary	ovary
10	chr16:71315400-71321800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr16:71315600-71318200	Weak transcription	Brain Substantia Nigra	brain
12	chr16:71315600-71318800	Weak transcription	Fetal Heart	heart
13	chr16:71315800-71317600	Weak transcription	HepG2	liver
14	chr16:71315800-71317600	Weak transcription	HMEC	breast
15	chr16:71315800-71317600	Weak transcription	HSMMtube	muscle
16	chr16:71315800-71318200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr16:71315800-71319000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr16:71315800-71319000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr16:71315800-71319000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr16:71315800-71322000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr16:71315800-71322200	Weak transcription	Right Ventricle	heart
22	chr16:71316000-71317600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr16:71316000-71317600	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr16:71316000-71317600	Weak transcription	Colon Smooth Muscle	Colon
25	chr16:71316000-71317600	Weak transcription	Fetal Stomach	stomach
26	chr16:71316000-71317600	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr16:71316000-71318600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr16:71316200-71317600	Enhancers	Pancreatic Islets	Pancreatic Islet
29	chr16:71316200-71317800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr16:71316200-71317800	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr16:71316200-71317800	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr16:71316200-71318000	Weak transcription	Adipose Nuclei	Adipose
33	chr16:71316200-71318800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr16:71316200-71318800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr16:71316200-71318800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr16:71316200-71318800	Weak transcription	Spleen	Spleen
37	chr16:71316200-71321000	Strong transcription	HSMM	muscle
38	chr16:71316200-71321400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr16:71316200-71321600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
40	chr16:71316400-71318200	Weak transcription	Hela-S3	cervix
41	chr16:71316400-71318800	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr16:71316400-71318800	Weak transcription	NHLF	lung
43	chr16:71316400-71318800	Weak transcription	Osteobl	bone
44	chr16:71316400-71319000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr16:71316400-71319000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr16:71316600-71317600	Weak transcription	Lung	lung
47	chr16:71316600-71321000	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr16:71316600-71322000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr16:71316600-71322600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr16:71316800-71317800	Flanking Active TSS	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links