Variant report

Variant	rs11863110
Chromosome Location	chr16:71394595-71394596
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:71394122..71396003-chr16:71426009..71428351,2	MCF-7	breast:
2	chr16:70953024..70955680-chr16:71392998..71394958,2	K562	blood:
3	chr16:71389754..71391626-chr16:71394077..71395778,2	MCF-7	breast:
4	chr16:71392857..71395586-chr21:9824098..9826321,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000264063	Chromatin interaction
ENSG00000264462	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10500556	1.00[MEX][hapmap]
rs16970857	1.00[MKK][hapmap];0.91[YRI][hapmap]
rs16973278	1.00[MEX][hapmap]
rs16973322	1.00[MEX][hapmap]
rs7205342	1.00[MEX][hapmap]
rs8061512	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv482374	chr16:71228600-71401617	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1062426	chr16:71307180-71423400	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv572949	chr16:71352071-71426563	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71391600-71394800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr16:71391600-71395000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr16:71392000-71395200	Enhancers	NHDF-Ad	bronchial
4	chr16:71392400-71395200	Bivalent/Poised TSS	Fetal Brain Female	brain
5	chr16:71392800-71394600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr16:71392800-71394800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr16:71393000-71394600	Enhancers	NHLF	lung
8	chr16:71393000-71394800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr16:71393000-71394800	Enhancers	HSMM	muscle
10	chr16:71393000-71394800	Enhancers	NH-A	brain
11	chr16:71393000-71395000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr16:71393000-71395000	Enhancers	Osteobl	bone
13	chr16:71393000-71395400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr16:71393000-71395400	Enhancers	HMEC	breast
15	chr16:71393000-71398000	Weak transcription	Right Atrium	heart
16	chr16:71393200-71394800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr16:71393800-71395200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr16:71394000-71394800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr16:71394000-71394800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr16:71394000-71394800	Enhancers	Hela-S3	cervix
21	chr16:71394000-71394800	Enhancers	K562	blood
22	chr16:71394000-71395000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr16:71394000-71395000	Enhancers	NHEK	skin
24	chr16:71394200-71394800	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
25	chr16:71394200-71394800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr16:71394200-71394800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr16:71394200-71394800	Enhancers	HUVEC	blood vessel
28	chr16:71394200-71395000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr16:71394200-71395000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr16:71394200-71395400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr16:71394200-71395800	Active TSS	Brain Germinal Matrix	brain
32	chr16:71394400-71394600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr16:71394400-71394600	Enhancers	A549	lung
34	chr16:71394400-71394800	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr16:71394400-71396000	Enhancers	Adipose Nuclei	Adipose

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