Variant report

Variant	rs16973278
Chromosome Location	chr16:71548821-71548822
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10500556	1.00[MEX][hapmap]
rs10500561	1.00[MEX][hapmap]
rs11863110	1.00[MEX][hapmap]
rs16973322	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.90[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16973331	1.00[MEX][hapmap]
rs60756192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7205342	1.00[MEX][hapmap]
rs8056168	1.00[MEX][hapmap]
rs8061512	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv906892	chr16:71526720-71570413	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71543400-71549800	Weak transcription	Pancreas	Pancrea
2	chr16:71547800-71549000	Enhancers	Colonic Mucosa	Colon
3	chr16:71548000-71549000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr16:71548600-71549200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr16:71548600-71549200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr16:71548600-71549400	Enhancers	Liver	Liver
7	chr16:71548800-71549200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr16:71548800-71549200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr16:71548800-71549400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr16:71548800-71549400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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