Variant report

Variant	rs16973331
Chromosome Location	chr16:71602665-71602666
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10500556	0.89[ASW][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap]
rs10500561	1.00[ASW][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16973278	1.00[MEX][hapmap]
rs16973322	1.00[MEX][hapmap]
rs16973337	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60236055	1.00[AMR][1000 genomes]
rs7205342	1.00[ASW][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8056168	1.00[ASW][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8056389	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8061512	0.89[ASW][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71599600-71605600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr16:71599600-71607800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr16:71600400-71604000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr16:71600600-71606000	Weak transcription	Fetal Intestine Large	intestine
5	chr16:71600600-71606000	Weak transcription	A549	lung
6	chr16:71600800-71603400	Weak transcription	HepG2	liver
7	chr16:71601000-71603200	Genic enhancers	Liver	Liver
8	chr16:71602400-71603000	Weak transcription	Fetal Intestine Small	intestine
9	chr16:71602400-71603600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr16:71602400-71615400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr16:71602600-71602800	Enhancers	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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