Variant report

Variant	rs16973337
Chromosome Location	chr16:71606410-71606411
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr16:71606365-71607014	HepG2	liver:	n/a	chr16:71606809-71606821 chr16:71606811-71606819 chr16:71606809-71606820 chr16:71606597-71606606
2	ARID3A	chr16:71606195-71607074	HepG2	liver:	n/a	n/a
3	HNF4A	chr16:71606371-71606934	HepG2	liver:	n/a	chr16:71606841-71606856 chr16:71606843-71606855 chr16:71606848-71606856
4	HNF4A	chr16:71606384-71607000	HepG2	liver:	n/a	chr16:71606841-71606856 chr16:71606843-71606855 chr16:71606848-71606856
5	CEBPB	chr16:71606365-71606713	HepG2	liver:	n/a	n/a
6	NFIC	chr16:71606064-71607106	HepG2	liver:	n/a	n/a
7	FOXA1	chr16:71606308-71607082	HepG2	liver:	n/a	chr16:71606865-71606877
8	SP1	chr16:71606359-71607070	A549	lung:	n/a	n/a
9	HDAC2	chr16:71606123-71607086	HepG2	liver:	n/a	chr16:71606232-71606246 chr16:71606872-71606881
10	FOXA2	chr16:71606383-71607076	HepG2	liver:	n/a	chr16:71606865-71606877
11	FOSL2	chr16:71606324-71607052	HepG2	liver:	n/a	chr16:71606809-71606821 chr16:71606811-71606819 chr16:71606597-71606606
12	FOXA1	chr16:71606386-71607013	HepG2	liver:	n/a	chr16:71606865-71606877
13	EP300	chr16:71606265-71607123	HepG2	liver:	n/a	n/a
14	HNF4G	chr16:71606327-71607066	HepG2	liver:	n/a	chr16:71606843-71606855 chr16:71606848-71606856
15	POLR2A	chr16:71606363-71606633	HepG2	liver:	n/a	n/a
16	MAX	chr16:71606266-71607208	HepG2	liver:	n/a	n/a
17	SP1	chr16:71606268-71607122	HepG2	liver:	n/a	n/a
18	SMC3	chr16:71606369-71607001	HepG2	liver:	n/a	n/a
19	TEAD4	chr16:71606032-71607138	HepG2	liver:	n/a	n/a
20	EP300	chr16:71606279-71607071	HepG2	liver:	n/a	n/a
21	MYBL2	chr16:71606175-71607215	HepG2	liver:	n/a	n/a
22	FOXA2	chr16:71606104-71607267	HepG2	liver:	n/a	chr16:71606865-71606877
23	JUND	chr16:71606131-71607057	HepG2	liver:	n/a	chr16:71606809-71606821 chr16:71606811-71606819 chr16:71606809-71606820 chr16:71606597-71606606
24	MAFF	chr16:71606364-71607133	HepG2	liver:	n/a	chr16:71606942-71606960
25	HEY1	chr16:71605958-71607185	HepG2	liver:	n/a	n/a
26	SP1	chr16:71606279-71607086	A549	lung:	n/a	n/a
27	NFIC	chr16:71606327-71607100	HepG2	liver:	n/a	n/a
28	CEBPB	chr16:71606351-71606813	HepG2	liver:	n/a	n/a
29	POLR2A	chr16:71606369-71607090	HepG2	liver:	n/a	n/a
30	TCF12	chr16:71606305-71607215	A549	lung:	n/a	n/a
31	MBD4	chr16:71606122-71607146	HepG2	liver:	n/a	n/a
32	CREB1	chr16:71606286-71607031	HepG2	liver:	n/a	n/a
33	HDAC2	chr16:71606329-71607046	HepG2	liver:	n/a	chr16:71606872-71606881
34	NR2F2	chr16:71606250-71607082	HepG2	liver:	n/a	n/a
35	FOXA1	chr16:71606257-71607189	HepG2	liver:	n/a	chr16:71606865-71606877
36	MYBL2	chr16:71605927-71607157	HepG2	liver:	n/a	n/a
37	FOXA1	chr16:71606320-71607130	HepG2	liver:	n/a	chr16:71606865-71606877

No.	Distal block	Cell Line	Cell type
1	chr16:71604916..71607501-chr16:71611136..71613771,2	K562	blood:
2	chr16:71598954..71602131-chr16:71602948..71606674,3	K562	blood:
3	chr16:71604094..71609680-chr16:71609822..71614465,7	MCF-7	breast:

Variant related genes	Relation type
TAT	TF binding region
ENSG00000157429	Chromatin interaction
ENSG00000198650	Chromatin interaction
ENSG00000260886	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10500561	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16973331	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60236055	1.00[AMR][1000 genomes]
rs7205342	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8056168	0.92[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8056389	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71599600-71607800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr16:71602400-71615400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr16:71604600-71606600	Transcr. at gene 5' and 3'	Liver	Liver
4	chr16:71605800-71607600	Enhancers	Fetal Intestine Small	intestine
5	chr16:71606000-71607000	Enhancers	Rectal Mucosa Donor 29	rectum
6	chr16:71606000-71607000	Flanking Active TSS	A549	lung
7	chr16:71606000-71607400	Flanking Active TSS	HepG2	liver
8	chr16:71606000-71607600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr16:71606000-71607600	Enhancers	Fetal Intestine Large	intestine
10	chr16:71606400-71607600	Enhancers	Hela-S3	cervix

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