Variant report

Variant	rs16971025
Chromosome Location	chr17:33820767-33820768
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12451141	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs12451679	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12453650	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16970988	1.00[ASW][hapmap];1.00[MEX][hapmap];0.86[EUR][1000 genomes]
rs16971028	1.00[ASW][hapmap]
rs62078141	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62078142	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62078145	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62078151	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62078154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8065626	0.85[CEU][hapmap];0.90[CHB][hapmap];0.81[CHD][hapmap];0.87[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055936	chr17:33327166-33884184	Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
2	nsv543317	chr17:33327166-33884184	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
3	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
4	nsv574741	chr17:33552275-33827134	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
5	nsv978414	chr17:33817908-33822518	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33815800-33826000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr17:33816000-33826400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr17:33816400-33821600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr17:33819600-33821600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr17:33819800-33820800	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr17:33819800-33821600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr17:33819800-33822600	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr17:33819800-33823000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr17:33820000-33823400	Enhancers	GM12878-XiMat	blood
10	chr17:33820200-33820800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr17:33820200-33821600	Weak transcription	Gastric	stomach
12	chr17:33820200-33822000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
13	chr17:33820400-33820800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
14	chr17:33820400-33821600	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr17:33820400-33822200	Weak transcription	Dnd41	blood
16	chr17:33820400-33822800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr17:33820600-33821600	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr17:33820600-33821600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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