Variant report

Variant	rs62078145
Chromosome Location	chr17:33793717-33793718
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12450604	0.84[EUR][1000 genomes]
rs12451141	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12451679	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12453650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12601267	1.00[AFR][1000 genomes]
rs16970988	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16971025	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16971028	1.00[AFR][1000 genomes]
rs3785758	1.00[AFR][1000 genomes]
rs62078109	0.83[EUR][1000 genomes]
rs62078141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62078142	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62078151	0.91[EUR][1000 genomes]
rs62078154	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7225005	0.81[EUR][1000 genomes]
rs72483216	0.84[EUR][1000 genomes]
rs8065626	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055936	chr17:33327166-33884184	Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
2	nsv543317	chr17:33327166-33884184	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
3	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
4	nsv574741	chr17:33552275-33827134	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
5	nsv1056116	chr17:33691457-33815452	Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	esv3432530	chr17:33738621-33802241	Flanking Active TSS Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33788000-33794000	Weak transcription	Hela-S3	cervix
2	chr17:33788400-33793800	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr17:33788400-33794200	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr17:33788400-33794400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr17:33788600-33794000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr17:33788600-33794000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr17:33788600-33794200	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr17:33788600-33794400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr17:33788600-33794600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr17:33788800-33794000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr17:33788800-33794200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr17:33790400-33794000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr17:33791000-33793800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr17:33791200-33801200	Weak transcription	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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