Variant report

Variant	rs16971300
Chromosome Location	chr16:72842418-72842419
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12446919	1.00[CEU][hapmap]
rs12447821	0.86[ASN][1000 genomes]
rs57678445	0.91[AFR][1000 genomes]
rs7193349	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7204350	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534039	chr16:72287171-72851170	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1063049	chr16:72577004-72887111	Weak transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv542952	chr16:72577004-72887111	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:72821600-72842800	Strong transcription	HepG2	liver
2	chr16:72822000-72847000	Weak transcription	Small Intestine	intestine
3	chr16:72822200-72866800	Weak transcription	Brain Angular Gyrus	brain
4	chr16:72822200-72869800	Weak transcription	Primary B cells from peripheral blood	blood
5	chr16:72822400-72844600	Weak transcription	NHDF-Ad	bronchial
6	chr16:72822800-72855600	Weak transcription	Thymus	Thymus
7	chr16:72825200-72847600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr16:72832200-72844800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr16:72832200-72846800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr16:72832200-72858400	Weak transcription	Brain Hippocampus Middle	brain
11	chr16:72832400-72844800	Weak transcription	Brain Anterior Caudate	brain
12	chr16:72832400-72844800	Weak transcription	Colonic Mucosa	Colon
13	chr16:72832600-72845200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr16:72832600-72845400	Weak transcription	Esophagus	oesophagus
15	chr16:72832600-72847600	Weak transcription	Right Ventricle	heart
16	chr16:72832600-72852000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr16:72832600-72874800	Weak transcription	Spleen	Spleen
18	chr16:72832800-72844800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr16:72833000-72844600	Weak transcription	HUVEC	blood vessel
20	chr16:72833000-72845000	Weak transcription	Fetal Kidney	kidney
21	chr16:72833000-72845200	Weak transcription	GM12878-XiMat	blood
22	chr16:72833000-72846200	Weak transcription	Fetal Heart	heart
23	chr16:72833000-72847600	Weak transcription	Pancreas	Pancrea
24	chr16:72833400-72844800	Weak transcription	Aorta	Aorta
25	chr16:72833600-72844600	Weak transcription	NHLF	lung
26	chr16:72833600-72844800	Weak transcription	Gastric	stomach
27	chr16:72833600-72845000	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr16:72833600-72856000	Weak transcription	Primary B cells from cord blood	blood
29	chr16:72833600-72861000	Weak transcription	Hela-S3	cervix
30	chr16:72833800-72844200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr16:72833800-72844600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr16:72833800-72844600	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr16:72833800-72844800	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr16:72833800-72845000	Weak transcription	Dnd41	blood
35	chr16:72833800-72861800	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr16:72834000-72844800	Weak transcription	Duodenum Mucosa	Duodenum
37	chr16:72834000-72844800	Weak transcription	Ovary	ovary
38	chr16:72834000-72844800	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr16:72834000-72848200	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr16:72834200-72842600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr16:72834200-72843200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr16:72834200-72844200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr16:72834200-72844400	Weak transcription	Osteobl	bone
44	chr16:72834200-72844800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr16:72834200-72844800	Weak transcription	Colon Smooth Muscle	Colon
46	chr16:72834200-72845000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr16:72834200-72847800	Weak transcription	HMEC	breast
48	chr16:72834200-72874200	Weak transcription	Primary hematopoietic stem cells	blood
49	chr16:72834600-72844400	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr16:72834800-72842600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links