Variant report

Variant	rs12446919
Chromosome Location	chr16:72877581-72877582
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:72876308..72878361-chr16:72959854..72961999,2	MCF-7	breast:
2	chr16:72876716..72878978-chr16:73099267..73102031,2	MCF-7	breast:
3	chr16:72877476..72879794-chr16:72879861..72883211,4	MCF-7	breast:
4	chr16:72868820..72873631-chr16:72873911..72878574,9	MCF-7	breast:
5	chr16:72875132..72886767-chr16:73085117..73094489,23	MCF-7	breast:
6	chr16:72873597..72878187-chr16:73079351..73084029,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140836	Chromatin interaction
ENSG00000272250	Chromatin interaction
ENSG00000271009	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16971300	1.00[CEU][hapmap]
rs4461079	0.83[AMR][1000 genomes]
rs7204350	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063049	chr16:72577004-72887111	Weak transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv542952	chr16:72577004-72887111	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:72862600-72882600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr16:72863800-72878600	Weak transcription	Fetal Intestine Large	intestine
3	chr16:72866600-72878000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr16:72867600-72892400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr16:72868600-72881400	Weak transcription	Hela-S3	cervix
6	chr16:72871000-72881800	Weak transcription	Liver	Liver
7	chr16:72872200-72883600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr16:72872400-72881200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr16:72872600-72877800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr16:72872600-72878000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr16:72872600-72878600	Weak transcription	Fetal Intestine Small	intestine
12	chr16:72872600-72879400	Weak transcription	Pancreas	Pancrea
13	chr16:72872600-72881400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr16:72872800-72880800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr16:72872800-72881400	Weak transcription	NH-A	brain
16	chr16:72873200-72878200	Weak transcription	Primary B cells from peripheral blood	blood
17	chr16:72873200-72891800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr16:72873400-72877800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr16:72873400-72881800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr16:72873600-72881400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr16:72873800-72878000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr16:72875000-72877600	Weak transcription	HepG2	liver
23	chr16:72875000-72878200	Weak transcription	Right Ventricle	heart
24	chr16:72875000-72878400	Weak transcription	Lung	lung
25	chr16:72875000-72882200	Weak transcription	Stomach Mucosa	stomach
26	chr16:72875000-72882400	Weak transcription	Gastric	stomach
27	chr16:72875200-72877600	Weak transcription	Brain Cingulate Gyrus	brain
28	chr16:72875200-72877600	Weak transcription	HSMMtube	muscle
29	chr16:72875200-72877800	Weak transcription	Primary hematopoietic stem cells	blood
30	chr16:72875200-72877800	Weak transcription	Right Atrium	heart
31	chr16:72875200-72877800	Weak transcription	HSMM	muscle
32	chr16:72875200-72878000	Weak transcription	Fetal Muscle Trunk	muscle
33	chr16:72875200-72878000	Weak transcription	GM12878-XiMat	blood
34	chr16:72875200-72878200	Weak transcription	Placenta	Placenta
35	chr16:72875200-72878200	Weak transcription	Left Ventricle	heart
36	chr16:72875200-72878200	Weak transcription	NHDF-Ad	bronchial
37	chr16:72875200-72878600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr16:72875200-72878600	Weak transcription	Duodenum Mucosa	Duodenum
39	chr16:72875200-72881800	Weak transcription	Ovary	ovary
40	chr16:72875400-72877800	Weak transcription	Spleen	Spleen
41	chr16:72875400-72878000	Weak transcription	Brain Hippocampus Middle	brain
42	chr16:72875400-72878200	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr16:72875400-72878400	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr16:72875400-72879400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr16:72875400-72879600	Weak transcription	Fetal Brain Female	brain
46	chr16:72875400-72880800	Weak transcription	Brain Substantia Nigra	brain
47	chr16:72875400-72882600	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr16:72875600-72877800	Weak transcription	Fetal Muscle Leg	muscle
49	chr16:72875600-72878000	Weak transcription	NHLF	lung
50	chr16:72875600-72878200	Weak transcription	Brain Germinal Matrix	brain

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