Variant report

Variant	rs4461079
Chromosome Location	chr16:72887826-72887827
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12445722	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12445743	0.86[CHB][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12446919	0.83[AMR][1000 genomes]
rs16971335	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16971338	0.88[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4788665	1.00[GIH][hapmap]
rs60056526	0.89[ASN][1000 genomes]
rs7184235	1.00[JPT][hapmap]
rs7190473	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7193479	0.93[ASN][1000 genomes]
rs7197411	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs7201079	0.88[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7204991	0.82[CHB][hapmap];0.89[ASN][1000 genomes]
rs8050587	1.00[JPT][hapmap]
rs9888808	0.88[CHB][hapmap];0.85[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9889054	0.88[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9936586	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:72867600-72892400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr16:72873200-72891800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr16:72882400-72891800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr16:72883200-72899200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr16:72883200-72909200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr16:72883400-72888000	Weak transcription	Spleen	Spleen
7	chr16:72883400-72891800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr16:72883400-72892200	Weak transcription	Brain Angular Gyrus	brain
9	chr16:72883400-72898400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr16:72883400-72898600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr16:72883400-72908400	Weak transcription	Fetal Intestine Large	intestine
12	chr16:72883400-72918800	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr16:72883600-72890800	Weak transcription	Brain Substantia Nigra	brain
14	chr16:72883600-72891000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr16:72883600-72892200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr16:72883600-72892400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr16:72883600-72893200	Weak transcription	Fetal Intestine Small	intestine
18	chr16:72883600-72912200	Weak transcription	Ovary	ovary
19	chr16:72883800-72908800	Weak transcription	Hela-S3	cervix
20	chr16:72884200-72891400	Weak transcription	Pancreas	Pancrea
21	chr16:72884200-72892000	Weak transcription	Colon Smooth Muscle	Colon
22	chr16:72884200-72899200	Weak transcription	Liver	Liver
23	chr16:72884200-72902200	Weak transcription	Right Ventricle	heart
24	chr16:72884200-72911600	Weak transcription	Gastric	stomach
25	chr16:72884400-72892800	Weak transcription	Fetal Heart	heart
26	chr16:72885200-72888000	Weak transcription	Brain Hippocampus Middle	brain
27	chr16:72885200-72891400	Weak transcription	Right Atrium	heart
28	chr16:72885200-72892400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr16:72885200-72892800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr16:72885200-72909000	Weak transcription	Lung	lung
31	chr16:72885400-72888000	Weak transcription	Psoas Muscle	Psoas
32	chr16:72885400-72888200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr16:72885400-72888200	Weak transcription	Placenta	Placenta
34	chr16:72885400-72890600	Weak transcription	Osteobl	bone
35	chr16:72885400-72891800	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr16:72885400-72891800	Weak transcription	Left Ventricle	heart
37	chr16:72885400-72891800	Weak transcription	Rectal Smooth Muscle	rectum
38	chr16:72885400-72891800	Weak transcription	NHLF	lung
39	chr16:72885400-72892000	Weak transcription	HSMMtube	muscle
40	chr16:72885400-72892400	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr16:72885400-72892400	Weak transcription	HSMM	muscle
42	chr16:72885400-72898200	Weak transcription	A549	lung
43	chr16:72885600-72889400	Enhancers	Primary monocytes fromperipheralblood	blood
44	chr16:72885600-72891000	Weak transcription	Stomach Smooth Muscle	stomach
45	chr16:72885600-72891200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr16:72885600-72891800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr16:72885800-72891400	Weak transcription	Fetal Muscle Trunk	muscle
48	chr16:72886600-72889200	Enhancers	Primary hematopoietic stem cells short term culture	blood
49	chr16:72886800-72888400	Strong transcription	HepG2	liver
50	chr16:72886800-72888800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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